|
3
|
1 <tool id="db2db" name="db2db" version="1.0">
|
|
|
2 <description></description>
|
|
|
3 <command interpreter="/usr/bin/php">
|
|
4
|
4 db2dbRestClient.php input='$input' inputValues='$inputValues' outputs='$output' taxonId='$taxon' fileType='$filetype' > $result
|
|
3
|
5 </command>
|
|
|
6 <inputs>
|
|
|
7 <param name="input" type="text" size="30" label="Enter an input ID name" />
|
|
|
8 <param name="inputValues" type="text" area="true" size="4x40" label="Paste input ID value(s)" />
|
|
|
9 <param name="output" type="text" size="30" label="Enter an output ID name(s)" />
|
|
|
10 <param name="taxon" size="30" type="text" label="Enter a taxon id (optional)" />
|
|
|
11 <param name="filetype" type="select" label="fileType options">
|
|
|
12 <option value="table">table</option>
|
|
|
13 <option value="xml">xml</option>
|
|
|
14 <option value="json">json</option>
|
|
|
15 </param>
|
|
|
16 </inputs>
|
|
|
17
|
|
|
18 <outputs>
|
|
|
19 <data format="html" name="result" label="db2db.results">
|
|
|
20 <change_format>
|
|
|
21 <when input="filetype" value=“xml” format=“xml” />
|
|
|
22 <when input="filetype" value=“json” format=“json” />
|
|
|
23 </change_format>
|
|
|
24 </data>
|
|
|
25 </outputs>
|
|
|
26
|
|
|
27
|
|
|
28 <help>
|
|
|
29
|
|
|
30 .. class:: infomark
|
|
|
31
|
|
|
32 **What it does**
|
|
|
33
|
|
|
34 Add instructions here.
|
|
|
35
|
|
|
36 -----
|
|
|
37
|
|
|
38
|
|
|
39 **Usage**
|
|
4
|
40 db2dbClient.php input='Ensembl Gene ID' inputValues='ENSG00000121410, ENSG00000171428' ouptput='Gene Symbol, Ensembl Protein ID' taxonId='9606'(optional)
|
|
3
|
41 </help>
|
|
|
42 </tool>
|
