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3
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1 <tool id="db2db" name="db2db" version="1.0">
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2 <description></description>
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3 <command interpreter="/usr/bin/php">
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4 /mnt/webrepo/fr-s-bsg-bio-d/htdocs/biodbnet_wrapper/db2dbRestClient.php input='$input' inputValues='$inputValues' outputs='$output' taxonId='$taxon' fileType='$filetype' > $result
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5 </command>
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6 <inputs>
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7 <param name="input" type="text" size="30" label="Enter an input ID name" />
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8 <param name="inputValues" type="text" area="true" size="4x40" label="Paste input ID value(s)" />
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9 <param name="output" type="text" size="30" label="Enter an output ID name(s)" />
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10 <param name="taxon" size="30" type="text" label="Enter a taxon id (optional)" />
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11 <param name="filetype" type="select" label="fileType options">
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12 <option value="table">table</option>
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13 <option value="xml">xml</option>
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14 <option value="json">json</option>
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15 </param>
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16 </inputs>
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17
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18 <outputs>
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19 <data format="html" name="result" label="db2db.results">
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20 <change_format>
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21 <when input="filetype" value=“xml” format=“xml” />
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22 <when input="filetype" value=“json” format=“json” />
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23 </change_format>
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24 </data>
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25 </outputs>
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26
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27
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28 <help>
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29
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30 .. class:: infomark
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31
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32 **What it does**
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33
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34 Add instructions here.
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35
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36 -----
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37
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38
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39 **Usage**
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40 /mnt/webrepo/fr-s-bsg-bio-d/htdocs/biodbnet_wrapper/db2dbClient.php input='Ensembl Gene ID' inputValues='ENSG00000121410, ENSG00000171428' ouptput='Gene Symbol, Ensembl Protein ID' taxonId='9606'(optional)
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41 </help>
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42 </tool>
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