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comparison db2db.xml @ 3:d4e959143115 draft

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author cheanney
date Tue, 07 Jul 2015 13:02:00 -0400
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2:ae43e2d7f68a 3:d4e959143115
1 <tool id="db2db" name="db2db" version="1.0">
2 <description></description>
3 <command interpreter="/usr/bin/php">
4 /mnt/webrepo/fr-s-bsg-bio-d/htdocs/biodbnet_wrapper/db2dbRestClient.php input='$input' inputValues='$inputValues' outputs='$output' taxonId='$taxon' fileType='$filetype' > $result
5 </command>
6 <inputs>
7 <param name="input" type="text" size="30" label="Enter an input ID name" />
8 <param name="inputValues" type="text" area="true" size="4x40" label="Paste input ID value(s)" />
9 <param name="output" type="text" size="30" label="Enter an output ID name(s)" />
10 <param name="taxon" size="30" type="text" label="Enter a taxon id (optional)" />
11 <param name="filetype" type="select" label="fileType options">
12 <option value="table">table</option>
13 <option value="xml">xml</option>
14 <option value="json">json</option>
15 </param>
16 </inputs>
17
18 <outputs>
19 <data format="html" name="result" label="db2db.results">
20 <change_format>
21 <when input="filetype" value=“xml” format=“xml” />
22 <when input="filetype" value=“json” format=“json” />
23 </change_format>
24 </data>
25 </outputs>
26
27
28 <help>
29
30 .. class:: infomark
31
32 **What it does**
33
34 Add instructions here.
35
36 -----
37
38
39 **Usage**
40 /mnt/webrepo/fr-s-bsg-bio-d/htdocs/biodbnet_wrapper/db2dbClient.php input='Ensembl Gene ID' inputValues='ENSG00000121410, ENSG00000171428' ouptput='Gene Symbol, Ensembl Protein ID' taxonId='9606'(optional)
41 </help>
42 </tool>