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1 <tool id="dbAnnot" name="dbAnnot" version="1.0">
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2 <description>Database Annotation (dbAnnot) allows for easy annotations of biological identifiers. </description>
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3 <command interpreter="/usr/bin/php">
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4 dbAnnotRestClient.php inputValues='$inputValues' annotations='$annotations' taxonId='$taxon' fileType='$filetype' > $result
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5 </command>
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6 <inputs>
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7 <param name="annotations" type="text" size="30" label="Enter annotation ID name(s)" />
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8 <param name="inputValues" type="text" area="true" size="4x40" label="Paste input ID value(s)" /> <param name="taxon" size="30" type="text" label="Enter a taxon id (optional)" />
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9 <param name="filetype" type="select" label="fileType options">
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10 <option value="table">table</option>
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11 <option value="xml">xml</option>
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12 <option value="json">json</option>
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13 </param>
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14 </inputs>
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15
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16 <outputs>
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17 <data format="html" name="result" label="dbAnnot.results">
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18 <change_format>
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19 <when input="filetype" value="xml" format="xml" />
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20 </change_format>
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21 </data>
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22 </outputs>
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23
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24
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25 <help>
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26
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27 .. class:: infomark
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28
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29 **What it does**
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30
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31 Add instructions here.
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32
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33 -----
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34
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35
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36 **Usage**
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37 dbAnnot.php inputValues='SP140' annotations='Genes,Pathways' fileType='table' TaxonId='9606' (optional)
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38 </help>
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39 </tool>
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