Mercurial > repos > chemteam > gmx_rg

annotate test-data/outp.xvg @ 0:a5afe283962d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
author chemteam
date Wed, 01 Dec 2021 15:34:01 +0000
parents
children b01f3db44534
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
1 # This file was created Mon Jun 7 09:13:14 2021
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
2 # Created by:
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
3 # :-) GROMACS - gmx energy, 2021.1-MODIFIED (-:
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
4 #
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
5 # Executable: /home/runner/miniconda3/envs/__gromacs@2021.1/bin.AVX2_256/gmx
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
6 # Data prefix: /home/runner/miniconda3/envs/__gromacs@2021.1
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
7 # Working dir: /tmp/tmpc3_9dc8m/job_working_directory/000/13/working
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
8 # Command line:
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
9 # gmx energy -f ./edr_input.edr -o ./energy.xvg
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
10 # gmx energy is part of G R O M A C S:
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
11 #
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
12 # Glycine aRginine prOline Methionine Alanine Cystine Serine
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
13 #
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
14 @ title "GROMACS Energies"
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
15 @ xaxis label "Time (ps)"
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
16 @ yaxis label "(kJ/mol)"
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
17 @TYPE xy
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
18 @ view 0.15, 0.15, 0.75, 0.85
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
19 @ legend on
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
20 @ legend box on
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
21 @ legend loctype view
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
22 @ legend 0.78, 0.8
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
23 @ legend length 2
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
24 @ s0 legend "Potential"
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
25 @ s1 legend "Total Energy"
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
26 @ s2 legend "Conserved En."
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
27 0.000000 -875.856201 -565.607910 -561.483948
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
28 0.100000 -937.817383 -652.096558 -563.097961
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
29 0.200000 -1076.080811 -764.079712 -564.585632
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
30 0.300000 -1128.099854 -869.548645 -563.387207
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
31 0.400000 -1194.588623 -941.101868 -563.371216
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
32 0.500000 -1229.046509 -942.665039 -564.364685
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
33 0.600000 -1304.865845 -1042.604736 -565.530396
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
34 0.700000 -1355.996216 -1110.028687 -566.059509
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
35 0.800000 -1339.003906 -1115.218750 -566.635681
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
36 0.900000 -1310.706909 -1073.441406 -566.569702
a5afe283962d "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 0941b05e72c90bcf5521efa52767390864be5033"
chemteam
parents:
diff changeset
37 1.000000 -1306.671997 -1089.731323 -566.253174