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1 [TOC]
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2
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3 # rename_kcf.py
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4 This tool reads kcf glycans and sequentially renames them as GLY{$COUNT}. Why? Sometimes entry names have illegal chars e.g. "-" or sometimes they are linearcode.
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5
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6 ## Works with Galaxy?
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7 Yes. see [rename_kcf.xml](rename_kcf.xml)
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8
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9 ## Command line usage
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10
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11 ```
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12 ../../virtualpy/bin/activate
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13 python rename_kcf.py -i $input -o $kcfoutput -p $prefix -c $counter
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14 ```
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15
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16
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17 ## Help
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18 ```
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19 ../../virtualpy/bin/activate
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20 python rename_kcf.py -h
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21 ```
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22
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23 ## Unit Testing?
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24 Yes.
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25
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26
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27
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28 ```
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29 ../../virtualpy/bin/activate
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30 python test_rename_kcf.py
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31 ```
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