comparison get_data/cfg_array/info/Primary Screen.html @ 0:89592faa2875 draft

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author chrisb
date Wed, 23 Mar 2016 14:35:56 -0400
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1 <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
2 <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"><!--
3 ## Site Configuration
4 ## @siteName FG
5 ## @scope Site
6 ## @adaption taken from ABA by JDG@NPG 2006
7 --><!-- used in ${common}/includes/separator.fhtml --><!-- used in ${common}/includes/clearfloats.fhtml --><!-- used in ${common}/includes/global.backtotop.fhtml --><!-- SET THE BASE FOLDERS FOR THE SITE --><head>
8
9 <title>Primary Screen</title>
10
11
12
13
14
15 <!-- metadata and links -->
16 <meta http-equiv="Content-Style-Type" content="text/css">
17 <meta http-equiv="Content-Type" content="text/html; charset=windows-1252">
18
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29 <meta name="description" content="">
30
31 <style type="text/css" media="screen, projection"><!--/*--><![CDATA[/*><!--*/
32 @import "/fg/style/layout.css";
33 @import "/fg/style/site.css";
34 @import "/fg/style/header_footer_smallfonts.css";
35 @import "/fg/style/restrict_width/930px.css";/* do not edit this stylesheet */
36 /*]]>*/--></style>
37
38 <!-- IE specific scripts - min/max fix -->
39 <!--[if lte IE 6]>
40 <script type="text/javascript" src="/fg/scripts/minmax.js"></script>
41 <![endif]-->
42 <!-- end IE specific scripts -->
43
44 <style type="text/css" media="screen, projection"><!--/*--><![CDATA[/*><!--*/
45 @import "/glycomics/common/css/general.css";
46 @import "/glycomics/common/css/jquery-ui-1.8.16.custom.css";
47 @import "/glycomics/common/css/jquery.bubblepopup.v2.3.1.css";
48 label.error { float: none; color: red; padding-left: .5em; vertical-align: middle; };
49 /*]]>*/--></style>
50
51 <script src="Primary%20Screen_files/ga.js" async="" type="text/javascript"></script><script type="text/javascript" language="javascript" src="Primary%20Screen_files/css_sidemenu.js"></script>
52 <script type="text/javascript" language="javascript" src="Primary%20Screen_files/openWindow.js"></script>
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59 <script type="text/javascript" src="Primary%20Screen_files/jquery-1.js" language="javascript"></script>
60 <script type="text/javascript" src="Primary%20Screen_files/jquery.js" language="javascript"></script>
61
62
63 </head>
64
65 <body class="www-nature-com-fg" id="info">
66
67 <!-- header -->
68 <div id="head-er">
69 <div class="header-nonad-wrapper" id="top">
70 <div class="accessibility-login-wrap">
71 <div class="accessibility-login">
72 <ul class="jumplinks">
73 <li class="first"><a href="#content">Jump&nbsp;to&nbsp;main&nbsp;content</a></li>
74 <li><a href="#main-journal-nav">Jump&nbsp;to&nbsp;navigation</a></li>
75 </ul>
76
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78
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80 </div>
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84
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87
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90 <div class="image-user-services">
91 <a href="http://www.functionalglycomics.org/fg"><img src="Primary%20Screen_files/journal_header.gif" class="journal-header" alt="Functional Glycomics homepage"></a>
92
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94
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100
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103
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106
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109
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111 </div>
112 </div>
113 </div>
114 </div>
115 <!-- end header -->
116
117 <!-- opening divs for fixed width layout -->
118 <div id="constrain"><div class="constrain">
119
120
121 <!-- OPEN DIV FOR CONTENT AND SITE NAVIGATION -->
122 <div id="content-journalnav">
123
124 <!-- START JOURNALNAV DIV -->
125
126 <div id="journalnav"><!-- journalnav class must match class on naivgation list item to highlight that item -->
127 <h1 class="hidden">Site Navigation</h1>
128 <map title="main journal navigation" id="main-journal-nav" class="journal-nav">
129 <ul class="xoxo">
130 <li><h1 class="hidden">Site Navigation</h1>
131 <!-- menuCurrentPage is set to: glycanArray -->
132 <ul>
133 <li><a href="http://www.functionalglycomics.org/static/index.shtml" title="Homepage">Home/Search</a></li>
134 </ul>
135 </li>
136
137 <li>
138 <a href="http://www.functionalglycomics.org/static/consortium/consortium.shtml" title="Consortium">Consortium for Functional Glycomics (<abbr title="Consortium for Functional Glycomics">CFG</abbr>)</a>
139
140 </li>
141 <li class="nav-net"><a href="http://www.functionalglycomics.org/CFGparadigms/index.php/Welcome_to_the_CFG_Paradigm_Pages" class="reg-rec" title="CFG Paradigms">CFG Paradigm Pages</a></li>
142
143 <li>
144 <a href="http://www.functionalglycomics.org/static/consortium/resources.shtml" title="Resources"><abbr title="CFG resources">CFG</abbr> Resources</a>
145
146 </li>
147
148
149 <li class="selected">
150 <a href="http://www.functionalglycomics.org/glycomics/publicdata/home.jsp" title="Consortium Data"><abbr title="CFG data">CFG</abbr> Data</a>
151
152
153 <ul class="subnav">
154 <li class="selected"><a href="http://www.functionalglycomics.org/glycomics/publicdata/primaryscreen.jsp" title="Glycan Screen">Glycan Array</a></li><li><a href="http://www.functionalglycomics.org/glycomics/publicdata/glycoprofiling-new.jsp" title="Glycan Profiling">Glycan Profiling</a></li><li><a href="http://www.functionalglycomics.org/glycomics/publicdata/microarray.jsp" title="Micro Array">Gene Microarray</a></li><li><a href="http://www.functionalglycomics.org/glycomics/publicdata/phenotyping.jsp" title="Phenotyping">Mouse Phenotyping</a></li></ul>
155
156 </li>
157
158 <li><a href="http://www.functionalglycomics.org/glycomics/common/jsp/firstpage.jsp" title="CFG Molecule Pages"><abbr title="CFG Molecule Pages">CFG</abbr> Molecule Pages</a>
159
160 </li>
161
162 <li><a href="http://www.functionalglycomics.org/static/consortium/Meetings.shtml" title="Meetings">Meetings</a>
163
164
165 </li>
166
167 <li> <a href="http://www.functionalglycomics.org/static/consortium/Library.shtml" title="Library">CFG Library</a>
168
169
170 </li>
171 <li class="spacing"><h2 class="toolbox">Toolbox</h2></li><li>
172 <a href="http://www.openhelix.com/cfg" title="OpenHelix Tutorial" target="tutorial">Tutorial</a>
173 </li><li><a href="http://www.functionalglycomics.org/static/consortium/links.shtml" title="Glycomics Links">Glycomics Links</a>
174
175 </li><li><a href="http://www.functionalglycomics.org/fg/site_guide/about.shtml" title="About us">About us</a></li><li><a href="http://www.functionalglycomics.org/glycomics/common/jsp/suggestion/suggestion.jsp" title="suggestion">Suggestion</a></li><li><a href="http://www.functionalglycomics.org/static/consortium/map.shtml" title="Sitemap">Sitemap</a></li><li><a href="http://www.functionalglycomics.org/static/consortium/FAQs.shtml" title="FAQs">FAQs</a></li></ul></map>
176
177
178
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189 <!-- <p class="nav-new"><a class="whats-new" href="http://www.functionalglycomics.org/static/consortium/whatsnew.shtml" title="what is new on the Functional Glycomics Consortium page">What's new</a></p> -->
190
191
192
193 </div><!-- CLOSEs JOURNALNAV DIV -->
194
195 <!-- content -->
196 <div id="content">
197
198
199
200
201
202
203
204
205
206
207
208 <script type="text/javascript">
209
210 function checkAll(v,top,mn,mx,a,b)
211 {
212 for(var i=mn;i<mx;i++)
213 document.pspresentation.selectedSetsToDisplay[i].checked=eval(v);
214 document.pspresentation.animalLectins.checked=false;
215
216 return unCheckWrongOnes(top,a,b);
217
218 }
219
220 function unCheckWrongOnes(v,a,b)
221 {
222 var i,j;
223
224 if (v < a) {
225 for(i=a;i<b;i++)
226 document.pspresentation.selectedSetsToDisplay[i].checked=false;
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235 </script>
236
237
238
239 <table border="0" width="100%">
240 <tbody><tr>
241
242 <td class="norm" valign="top" width="80%">
243
244
245 <table>
246 <tbody><tr>
247 <td colspan="2" valign="top" width="100%">
248 <h2 align="center">Search glycan array data</h2>
249 </td>
250 </tr>
251 <tr>
252 <td colspan="2" class="webSiteBodyThin">This search interface offers access to all results obtained from screening
253 samples for glycan binding specificity on the CFG mammalian glycan array,
254 CFG pathogen glycan array, and CDC glycan array by the
255 CFG Protein-Carbohydrate Interaction Core. Please select a
256 sample type or glycan array version and click on Submit
257 Selections. From the resulting list of samples, access raw
258 data, bar charts showing which glycans bound to each sample
259 with high affinity, and other information. The bar charts are
260 a portal to further information about relevant glycans,
261 including a 3-D modeling feature (GLYCAM).
262 </td>
263 </tr>
264 <tr>
265 <td>&nbsp;</td>
266 </tr>
267 <tr>
268 <td>&nbsp;</td>
269 </tr>
270 <tr>
271 <td class="webSiteBodyThin" colspan="4">
272 <ul>
273 <li>
274 <a href="javascript:openWindow('http://www.openhelix.com/cfg')">OpenHelix tutorial</a> for CFG Functional Glycomics Gateway
275 </li>
276 </ul>
277 </td>
278 </tr>
279 </tbody></table>
280
281 <form name="pspresentation" action="/glycomics/publicdata/selectedScreens.jsp" method="POST">
282 <table align="center">
283
284 <tbody><tr>
285 <td><!-- left one -->
286 <table align="center" border="0">
287
288 <tbody><tr>
289 <td class="webSiteBodyGreenText" colspan="2">Search by Sample Type</td>
290 </tr>
291 <tr>
292 <td colspan="2">&nbsp;</td>
293 </tr>
294 <tr>
295 <td colspan="2" class="webSiteBody"><input name="animalLectins" value="true" onclick="checkAll(this.value,1,0,4,8,15)" type="checkbox">Animal Glycan-binding proteins<br>
296 </td>
297 </tr>
298 <tr>
299 <td>&nbsp;</td>
300 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="cTypeLectins" onclick="unCheckWrongOnes(0,8,15)" type="checkbox">C-type lectins</td>
301 </tr>
302 <tr>
303 <td>&nbsp;</td>
304 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="iTypeLectins" onclick="unCheckWrongOnes(1,8,15)" type="checkbox">Siglecs</td>
305 </tr>
306 <tr>
307 <td>&nbsp;</td>
308 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="sTypeLectins" onclick="unCheckWrongOnes(2,8,15)" type="checkbox">Galectins</td>
309 </tr>
310 <tr>
311 <td>&nbsp;</td>
312 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="otherAnimalLectins" onclick="unCheckWrongOnes(3,8,15)" type="checkbox">Other</td>
313 </tr>
314 <tr>
315 <td colspan="2" class="webSiteBody"><input name="selectedSetsToDisplay" value="plantLectins" onclick="unCheckWrongOnes(4,8,15)" type="checkbox">Plant Lectins</td>
316 </tr>
317 <tr>
318 <td colspan="2" class="webSiteBody"><input name="selectedSetsToDisplay" value="antiBodies" onclick="unCheckWrongOnes(5,8,15)" type="checkbox">Antibodies and Serum samples</td>
319 </tr>
320 <tr>
321 <td colspan="2" class="webSiteBody"><input name="selectedSetsToDisplay" value="other" onclick="unCheckWrongOnes(6,8,15)" type="checkbox">Other (Pathogens [bacteria, viruses], Microbial
322 lectins, etc)</td>
323 </tr>
324 <tr>
325 <td colspan="2" class="webSiteBody"><input name="selectedSetsToDisplay" value="cellsOrganisms" onclick="unCheckWrongOnes(7,8,15)" type="checkbox">Cells, Organisms</td>
326 </tr>
327
328 </tbody></table>
329
330 </td>
331 <td>&nbsp;&nbsp;</td>
332 <td>&nbsp;&nbsp;</td>
333 <td>&nbsp;&nbsp;</td>
334
335
336
337 <td><!-- right one -->
338 <table align="center">
339
340 <tbody><tr>
341 <td class="webSiteBodyGreenText" colspan="2">Or by Glycan
342 Array type/version </td>
343 </tr>
344 <tr>
345 <td class="webSiteBody">&nbsp;</td>
346 </tr>
347 <tr>
348 <td class="webSiteBody">&nbsp;</td>
349 </tr>
350
351
352 <tr>
353 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="v1" onclick="unCheckWrongOnes(8,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/coreH/arrayContents/GlycanArray_(EA)_v1x.xls')">Mammalian Plate Array Ver. 1</a></td>
354 </tr>
355
356 <tr>
357 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="v2" onclick="unCheckWrongOnes(9,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/coreH/arrayContents/GlycanArray_(EA)_v2x.xls')">Mammalian Plate Array Ver. 2</a></td>
358 </tr>
359
360 <tr>
361 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="v3" onclick="unCheckWrongOnes(10,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/coreH/arrayContents/GlycanArray_(EA)_v3x.xls')">Mammalian Plate Array Ver. 3</a></td>
362 </tr>
363
364 <tr>
365 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv1" onclick="unCheckWrongOnes(11,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/coreH/arrayContents/Printed_Array_v1.xls')">Mammalian Printed Array Ver. 1</a></td>
366 </tr>
367
368 <tr>
369 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv2" onclick="unCheckWrongOnes(12,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/coreH/arrayContents/Printed_Array_v2.xls')">Mammalian Printed Array Ver. 2</a></td>
370 </tr>
371
372 <tr>
373 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv21" onclick="unCheckWrongOnes(13,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/glycomics/publicdata/arrayContents/Printed_Array_v2.1.xls')">Mammalian Printed Array Ver. 2.1</a></td>
374 </tr>
375
376 <tr>
377 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv3" onclick="unCheckWrongOnes(14,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh10.shtml')">Mammalian Printed Array Ver. 3.0</a></td>
378 </tr>
379
380 <tr>
381 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv31" onclick="unCheckWrongOnes(15,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh11.shtml')">Mammalian Printed Array Ver. 3.1</a></td>
382 </tr>
383
384 <tr>
385 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv32" onclick="unCheckWrongOnes(16,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh12.shtml')">Mammalian Printed Array Ver. 3.2</a></td>
386 </tr>
387
388 <tr>
389 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv4" onclick="unCheckWrongOnes(17,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh13.shtml')">Mammalian Printed Array Ver 4.0</a></td>
390 </tr>
391
392 <tr>
393 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv41" onclick="unCheckWrongOnes(18,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh14.shtml')">Mammalian Printed Array Ver 4.1</a></td>
394 </tr>
395
396 <tr>
397 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv42" onclick="unCheckWrongOnes(19,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh15.shtml')">Mammalian Printed Array Ver 4.2</a></td>
398 </tr>
399
400 <tr>
401 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv5" onclick="unCheckWrongOnes(20,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh16.shtml')">Mammalian Printed Array Ver 5.0</a></td>
402 </tr>
403
404 <tr>
405 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv51" onclick="unCheckWrongOnes(21,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh8.shtml')">Mammalian Printed Array Ver 5.1</a></td>
406 </tr>
407
408 <tr>
409 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv52" onclick="unCheckWrongOnes(22,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh9.shtml')">Mammalian Printed Array Ver 5.2</a></td>
410 </tr>
411
412 <tr>
413 <td class="webSiteBody"><input name="selectedSetsToDisplay" value="bactv1" onclick="unCheckWrongOnes(23,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh8p.shtml')">Pathogen Array Ver 1.0</a></td>
414 </tr>
415
416 <tr><td class="webSiteBody">&nbsp;</td>
417 </tr>
418 <tr>
419 <td class="webSiteBody">&nbsp;</td>
420 </tr>
421 <tr>
422 <td class="webSiteBody">&nbsp;</td>
423 </tr>
424 <tr>
425 <td class="webSiteBody">&nbsp;</td>
426 </tr>
427 <tr>
428 <td class="webSiteBody">&nbsp;</td>
429 </tr>
430
431
432 </tbody></table>
433
434 <table align="center">
435 <tbody><tr>
436 <td class="webSiteBodyGreenText" colspan="2">
437 <a href="http://www.functionalglycomics.org/glycomics/common/jsp/resource/existingFilesForRequest.jsp?requserlogin=rubendonis&amp;resReqKey=1001109&amp;rrid=cfg_rRequest_1336&amp;projectDesc=To%20provide%20an%20interface%20%20to%20upload%20data%20collected%20on%20influenza%20virus%20receptor%20specficity%20with%20the%20custon%20CDC%20array&amp;showDelete=true&amp;showMakePublic=true">
438 Data from glycan arrays supplied to Centers for Disease Control</a>
439 </td>
440 </tr>
441 <tr>
442 <td class="webSiteBodyGreenText" colspan="2">
443
444 </td>
445 </tr>
446 </tbody></table>
447
448 </td>
449 </tr>
450
451 <tr><td colspan="5" align="center">
452 <input name="dataNature" value="DataOnly" type="radio"> Data only
453 &nbsp;
454 <input name="dataNature" value="InconclusiveOnly" type="radio"> Inconclusive Only
455 &nbsp;
456 <input name="dataNature" value="All" type="radio">All
457 </td></tr>
458
459 <tr>
460 <td class="webSiteBodyGreenText" colspan="5" align="center">*
461 Submitting with no selections would display all the available
462 results. You may also restrict the results displayed to <b>Data</b>
463 only or <b>inconclusive</b> results only.</td>
464 </tr>
465 <tr>
466 <td class="webSiteBody" colspan="5" align="center"><input value="Submit Selections" name="B3" type="submit"></td>
467 </tr>
468
469
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472 <!--end inner table--></td>
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475
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478
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480
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488
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492
493 <p class="journal-name">Functional Glycomics Gateway</p>
494
495 <p class="eissn"><abbr title="International Standard Serial Number">ISSN</abbr><span class="hidden">:</span> 1752-184X</p>
496
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