diff convert_detect_formats/rings_detect_format/glycan_sniff.xml @ 0:89592faa2875 draft

Uploaded
author chrisb
date Wed, 23 Mar 2016 14:35:56 -0400
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+++ b/convert_detect_formats/rings_detect_format/glycan_sniff.xml	Wed Mar 23 14:35:56 2016 -0400
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+<tool id="glytools_format_detector" name="GAP detect format"  version="0.3">
+    <description>Detects glycan file format</description>
+    <requirements>
+        <requirement type="package" version="1.0">python_for_glycan_tools</requirement>
+    </requirements> 
+    <command interpreter="python"><![CDATA[glycan_sniff.py -i $input $format ]]></command>
+    <inputs>
+        <param format="kcf,glycoct,glycoct_xml,linucs,linearcode,iupac,wurcs,glydeii,txt" name="input" type="data" label="glycan source file"/>
+        <param name="format" type="select" label="From">
+          <option value="" selected="true"> no format specified (default)</option>
+          <option value="-f kcf" selected="false"> KCF </option>
+          <option value="-f glycoct" selected="false"> Glycoct </option>
+          <option value="-f glycoct_xml" selected="false"> Glycoct XML</option>
+          <option value="-f linucs" selected="false"> linucs </option>
+          <option value="-f linearcode" selected="false"> LinearCode </option>
+          <option value="-f iupac" selected="false"> IUPAC </option>
+          <option value="-f wurcs" selected="false"> WURCS </option>
+          <option value="-f glydeii" selected="false"> Glydeii </option>
+        </param>
+    </inputs>
+    <outputs>
+        <data format="txt" name="output" label="Format of $input.name"/>
+    </outputs>
+ <citations>
+     <!--  -->
+     <citation type="doi">10.1089/omi.2009.0129</citation>
+</citations>
+
+
+    <help> <![CDATA[ 
+.. class:: infomark
+
+**What this tool does**
+
+The tool can be used to guess the format and return the result as text. (returns format)
+Given a format, the tool can be used to confirm whether a sequence is in the given format. (returns True/False)
+
+.. class:: infomark
+
+**Input**
+
+Any glycan.
+
+]]>
+    </help>
+
+</tool>