Mercurial > repos > chrisb > gap_all_glycan_tools
view convert_detect_formats/rings_detect_format/glycan_sniff.xml @ 1:0a5e0df17054 draft default tip
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author | chrisb |
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date | Fri, 06 May 2016 08:05:48 -0400 |
parents | 89592faa2875 |
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<tool id="glytools_format_detector" name="GAP detect format" version="0.3"> <description>Detects glycan file format</description> <requirements> <requirement type="package" version="1.0">python_for_glycan_tools</requirement> </requirements> <command interpreter="python"><![CDATA[glycan_sniff.py -i $input $format ]]></command> <inputs> <param format="kcf,glycoct,glycoct_xml,linucs,linearcode,iupac,wurcs,glydeii,txt" name="input" type="data" label="glycan source file"/> <param name="format" type="select" label="From"> <option value="" selected="true"> no format specified (default)</option> <option value="-f kcf" selected="false"> KCF </option> <option value="-f glycoct" selected="false"> Glycoct </option> <option value="-f glycoct_xml" selected="false"> Glycoct XML</option> <option value="-f linucs" selected="false"> linucs </option> <option value="-f linearcode" selected="false"> LinearCode </option> <option value="-f iupac" selected="false"> IUPAC </option> <option value="-f wurcs" selected="false"> WURCS </option> <option value="-f glydeii" selected="false"> Glydeii </option> </param> </inputs> <outputs> <data format="txt" name="output" label="Format of $input.name"/> </outputs> <citations> <!-- --> <citation type="doi">10.1089/omi.2009.0129</citation> </citations> <help> <![CDATA[ .. class:: infomark **What this tool does** The tool can be used to guess the format and return the result as text. (returns format) Given a format, the tool can be used to confirm whether a sequence is in the given format. (returns True/False) .. class:: infomark **Input** Any glycan. ]]> </help> </tool>