Mercurial > repos > chrisb > gap_all_glycan_tools
diff convert_detect_formats/rings_kcf_to_image/README_convertKCF.md @ 0:89592faa2875 draft
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author | chrisb |
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date | Wed, 23 Mar 2016 14:35:56 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/convert_detect_formats/rings_kcf_to_image/README_convertKCF.md Wed Mar 23 14:35:56 2016 -0400 @@ -0,0 +1,30 @@ + +[TOC] + +# 1. post_kcf_to_image.py + +**This tool reads a kcf file (containing glycans) and returns images in CFG notation using the server at RINGS. Images are presented in html and the first kcf glycan is returned as a png.** + +## Works with Galaxy? +Yes. see [post_kcf_to_image.xml](post_kcf_to_image.xml) + + +## Command line usage +``` +../../virtualpy/bin/activate +python post_kcf_to_image.py $input $pngoutput $htmloutput +``` + +## Help +``` +../../virtualpy/bin/activate +python post_kcf_to_image.py -h +``` + +## Unit Testing? +Yes. Use test_rings_kcf_to_image.py + +``` +../../virtualpy/bin/activate +python test_rings_kcf_to_image.py +```