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+++ b/get_data/cfg_array/README_CFG_array.md	Wed Mar 23 14:35:56 2016 -0400
@@ -0,0 +1,46 @@
+[TOC]
+
+# 1. cfg_get_glycan_array_data.py
+
+Retrieve glycan array data from the CFG.
+
+With focus on retrieving the xls data and also pull the metadata.
+
+## Works with Galaxy?
+
+Not properly tested yet!! The xml in this directory is not correct.
+
+## Command line usage
+
+**NOT RECOMMENDED** This will download all xls and will take a while.
+```
+../../virtualpy/bin/activate
+python cfg_get_glycan_array_data.py
+```
+
+**RECOMMENDED** This will get all metadata and not download xls
+```
+../../virtualpy/bin/activate
+python cfg_get_glycan_array_data.py -d
+```
+
+This metadata can be viewed using the [CFG glycan array explorer](https://bitbucket.org/rxncor/cfg-data-chart)
+
+## Help
+```
+../../virtualpy/bin/activate
+python cfg_get_glycan_from_cells.py -h
+```
+
+## Unit Testing?
+Not yet! Although some testing has been done using *.html in ./info and ./templates
+Also passed json metadata to [CFG glycan array explorer](https://bitbucket.org/rxncor/cfg-data-chart)
+
+In principle:
+
+```
+../../virtualpy/bin/activate
+python test_cfg_get_glycan_from_cells.py
+
+```
+