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1 [TOC]
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3 # 1. cfg_get_glycan_array_data.py
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4
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5 Retrieve glycan array data from the CFG.
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6
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7 With focus on retrieving the xls data and also pull the metadata.
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8
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9 ## Works with Galaxy?
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10
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11 Not properly tested yet!! The xml in this directory is not correct.
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12
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13 ## Command line usage
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14
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15 **NOT RECOMMENDED** This will download all xls and will take a while.
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16 ```
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17 ../../virtualpy/bin/activate
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18 python cfg_get_glycan_array_data.py
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19 ```
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20
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21 **RECOMMENDED** This will get all metadata and not download xls
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22 ```
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23 ../../virtualpy/bin/activate
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24 python cfg_get_glycan_array_data.py -d
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25 ```
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26
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27 This metadata can be viewed using the [CFG glycan array explorer](https://bitbucket.org/rxncor/cfg-data-chart)
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28
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29 ## Help
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30 ```
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31 ../../virtualpy/bin/activate
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32 python cfg_get_glycan_from_cells.py -h
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33 ```
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34
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35 ## Unit Testing?
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36 Not yet! Although some testing has been done using *.html in ./info and ./templates
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37 Also passed json metadata to [CFG glycan array explorer](https://bitbucket.org/rxncor/cfg-data-chart)
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38
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39 In principle:
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40
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41 ```
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42 ../../virtualpy/bin/activate
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43 python test_cfg_get_glycan_from_cells.py
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44
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45 ```
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