Mercurial > repos > chrisb > gap_all_glycan_tools
view convert_detect_formats/rings_kcf_to_image/README_convertKCF.md @ 0:89592faa2875 draft
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author | chrisb |
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date | Wed, 23 Mar 2016 14:35:56 -0400 |
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[TOC] # 1. post_kcf_to_image.py **This tool reads a kcf file (containing glycans) and returns images in CFG notation using the server at RINGS. Images are presented in html and the first kcf glycan is returned as a png.** ## Works with Galaxy? Yes. see [post_kcf_to_image.xml](post_kcf_to_image.xml) ## Command line usage ``` ../../virtualpy/bin/activate python post_kcf_to_image.py $input $pngoutput $htmloutput ``` ## Help ``` ../../virtualpy/bin/activate python post_kcf_to_image.py -h ``` ## Unit Testing? Yes. Use test_rings_kcf_to_image.py ``` ../../virtualpy/bin/activate python test_rings_kcf_to_image.py ```