Mercurial > repos > chrisb > gap_all_glycan_tools
view get_data/kegg_glycan/2 @ 1:0a5e0df17054 draft default tip
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author | chrisb |
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date | Fri, 06 May 2016 08:05:48 -0400 |
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from KEGG searches as follows should work /find/genes/shiga+toxin for keywords "shiga" and "toxin" /find/genes/"shiga toxin" for keywords "shiga toxin" these do not function on all databases esp. enzyme http://rest.kegg.jp/find/enzyme/deoxy+1.1.1 AND works http://rest.kegg.jp/find/enzyme/"deoxy%201.1.1" OR does not work http://rest.kegg.jp/find/enzyme/"deoxy 1.1.1" OR does not work 0 http://rest.kegg.jp/find/enzyme/ec:2.4.99.1+ec:2.4.99.6 AND works but return nothing as no overlap http://rest.kegg.jp/find/enzyme/"ec:2.4.99.1 ec:2.4.99.6" OR doesn't work http://rest.kegg.jp/find/enzyme/ec:2.4.99. works ../../../virtualpy/bin/python findKEGG.py -d enzyme -q 2.4.99.1+2.4.99.6 . works but return None in python. which breaks file writing. rather fix this. # updated notes on KEGG behaviour True for release Release 78.0+/05-05, May 16 (see http://rest.kegg.jp/info/genes) multiple complex queries are not recommended. Using the shiga toxin example from http://www.genome.jp/kegg/rest/keggapi.html /find/genes/shiga+toxin for keywords "shiga" and "toxin" /find/genes/"shiga toxin" for keywords "shiga toxin" ## AND example /find/genes/shiga+toxin for keywords "shiga" and "toxin" http://rest.kegg.jp/find/genes/shiga+toxin ## OR example /find/genes/"shiga toxin" for keywords "shiga toxin" http://rest.kegg.jp/find/genes/"shiga%20toxin" ## BROKEN AND http://rest.kegg.jp/find/genes/"shiga+toxin" If query is in put in quotes. this result is the same as OR. ## BROKEN OR http://rest.kegg.jp/find/genes/shiga%20toxin If query is not placed in quotations. this result is the same as AND. # Recommendation Do not combine AND with OR queries