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| author | chrisb |
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| date | Fri, 06 May 2016 08:05:48 -0400 |
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# notes on KEGG behaviour Tested with Release 78.0+/05-05, May 16 (see http://rest.kegg.jp/info/genes) *Recommendation 1 - Do not combine AND with OR queries* multiple complex queries are not recommended. *OR's on certain db's e.g. glycan, enzyme do not always return correctly* ## Shiga toxin behaviour test Using the shiga toxin example from http://www.genome.jp/kegg/rest/keggapi.html /find/genes/shiga+toxin for keywords "shiga" and "toxin" /find/genes/"shiga toxin" for keywords "shiga toxin" results in test-data - test-data/shiga-toxin-example-AND - test-data/shiga-toxin-example-AND-broken - test-data/shiga-toxin-example-OR - test-data/shiga-toxin-example-OR-broken ### AND example /find/genes/shiga+toxin for keywords "shiga" and "toxin" http://rest.kegg.jp/find/genes/shiga+toxin ### OR example /find/genes/"shiga toxin" for keywords "shiga toxin" http://rest.kegg.jp/find/genes/"shiga%20toxin" ### BROKEN AND http://rest.kegg.jp/find/genes/"shiga+toxin" If query is in put in quotes. this result is the same as OR. ### BROKEN OR http://rest.kegg.jp/find/genes/shiga%20toxin If query is not placed in quotations. this result is the same as AND. ## Enzyme tests http://rest.kegg.jp/find/enzyme/deoxy+1.1.1 AND works http://rest.kegg.jp/find/enzyme/"deoxy%201.1.1" OR does not work http://rest.kegg.jp/find/enzyme/"deoxy 1.1.1" OR does not work 0 http://rest.kegg.jp/find/enzyme/ec:2.4.99.1+ec:2.4.99.6 AND works but return nothing as no overlap http://rest.kegg.jp/find/enzyme/"ec:2.4.99.1 ec:2.4.99.6" OR doesn't work http://rest.kegg.jp/find/enzyme/ec:2.4.99. works