Mercurial > repos > chrisd > amrplusplus_workflow

annotate amrplusplus_workflow.ga @ 6:86dc721b6860 draft

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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
author chrisd
date Wed, 22 Jun 2016 00:48:57 -0400
parents 04f9c20fecf8
children 0b7210ad9187
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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5
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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1 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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2 "a_galaxy_workflow": "true",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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3 "annotation": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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4 "format-version": "0.1",
6
86dc721b6860 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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5 "name": "amrplusplus workflow",
5
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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6 "steps": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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7 "0": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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8 "annotation": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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9 "content_id": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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10 "id": 0,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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11 "input_connections": {},
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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12 "inputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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13 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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14 "description": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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15 "name": "FASTQ Forward"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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16 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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17 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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18 "label": "FASTQ Forward",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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19 "name": "Input dataset",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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20 "outputs": [],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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21 "position": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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22 "left": 252,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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23 "top": 323
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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24 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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25 "tool_errors": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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26 "tool_id": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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27 "tool_state": "{\"name\": \"FASTQ Forward\"}",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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28 "tool_version": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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29 "type": "data_input",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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30 "uuid": "9c1f5852-9697-40e2-bc6f-7ac65ad647ce",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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31 "workflow_outputs": []
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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32 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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33 "1": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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34 "annotation": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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35 "content_id": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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36 "id": 1,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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37 "input_connections": {},
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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38 "inputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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39 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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40 "description": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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41 "name": "FASTQ Reverse"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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42 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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43 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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44 "label": "FASTQ Reverse",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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45 "name": "Input dataset",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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46 "outputs": [],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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47 "position": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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48 "left": 251,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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49 "top": 399
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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50 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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51 "tool_errors": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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52 "tool_id": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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53 "tool_state": "{\"name\": \"FASTQ Reverse\"}",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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54 "tool_version": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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55 "type": "data_input",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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56 "uuid": "030bf3fc-ee71-46c4-bfcf-8d963c04a478",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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57 "workflow_outputs": []
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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58 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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59 "2": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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60 "annotation": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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61 "content_id": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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62 "id": 2,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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63 "input_connections": {},
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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64 "inputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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65 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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66 "description": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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67 "name": "Host Genome"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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68 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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69 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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70 "label": "Host Genome",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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71 "name": "Input dataset",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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72 "outputs": [],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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73 "position": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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74 "left": 498,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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75 "top": 200
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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76 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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77 "tool_errors": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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78 "tool_id": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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79 "tool_state": "{\"name\": \"Host Genome\"}",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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80 "tool_version": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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81 "type": "data_input",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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82 "uuid": "95f884fc-215e-4d54-8212-e43be8a779b5",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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83 "workflow_outputs": []
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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84 },
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85 "3": {
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86 "annotation": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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87 "content_id": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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88 "id": 3,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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89 "input_connections": {},
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90 "inputs": [
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91 {
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92 "description": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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93 "name": "AMR Database"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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94 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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95 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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96 "label": "AMR Database",
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97 "name": "Input dataset",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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98 "outputs": [],
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99 "position": {
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100 "left": 1086,
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101 "top": 560
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102 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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103 "tool_errors": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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104 "tool_id": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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105 "tool_state": "{\"name\": \"AMR Database\"}",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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106 "tool_version": null,
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107 "type": "data_input",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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108 "uuid": "8a65e391-b837-41ef-9575-bedf5294da9e",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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109 "workflow_outputs": []
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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110 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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111 "4": {
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112 "annotation": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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113 "content_id": "toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.32.3",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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114 "id": 4,
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115 "input_connections": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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116 "paired_end|paired_input_type_conditional|fastq_r1_in": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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117 "id": 0,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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118 "output_name": "output"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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119 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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120 "paired_end|paired_input_type_conditional|fastq_r2_in": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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121 "id": 1,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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122 "output_name": "output"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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123 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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124 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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125 "inputs": [],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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126 "label": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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127 "name": "Trimmomatic",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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128 "outputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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129 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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130 "name": "fastq_out_paired",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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131 "type": "input"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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132 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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133 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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134 "name": "fastq_out_unpaired",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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135 "type": "input"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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136 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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137 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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138 "name": "fastq_out_r1_paired",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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139 "type": "fastqsanger"
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140 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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141 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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142 "name": "fastq_out_r2_paired",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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143 "type": "fastqsanger"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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144 },
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145 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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146 "name": "fastq_out_r1_unpaired",
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147 "type": "fastqsanger"
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148 },
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149 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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150 "name": "fastq_out_r2_unpaired",
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151 "type": "fastqsanger"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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152 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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153 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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154 "name": "fastq_out",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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155 "type": "fastqsanger"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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156 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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157 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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158 "position": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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159 "left": 465,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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160 "top": 303
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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161 },
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162 "post_job_actions": {
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163 "HideDatasetActionfastq_out": {
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164 "action_arguments": {},
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165 "action_type": "HideDatasetAction",
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166 "output_name": "fastq_out"
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167 },
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168 "HideDatasetActionfastq_out_paired": {
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169 "action_arguments": {},
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170 "action_type": "HideDatasetAction",
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171 "output_name": "fastq_out_paired"
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172 },
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173 "HideDatasetActionfastq_out_r1_unpaired": {
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174 "action_arguments": {},
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175 "action_type": "HideDatasetAction",
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176 "output_name": "fastq_out_r1_unpaired"
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177 },
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178 "HideDatasetActionfastq_out_r2_unpaired": {
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179 "action_arguments": {},
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180 "action_type": "HideDatasetAction",
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181 "output_name": "fastq_out_r2_unpaired"
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182 },
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183 "HideDatasetActionfastq_out_unpaired": {
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184 "action_arguments": {},
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185 "action_type": "HideDatasetAction",
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186 "output_name": "fastq_out_unpaired"
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187 }
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188 },
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189 "tool_errors": null,
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190 "tool_id": "toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.32.3",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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191 "tool_shed_repository": {
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192 "changeset_revision": "f8a9a5eaca8a",
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193 "name": "trimmomatic",
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194 "owner": "pjbriggs",
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195 "tool_shed": "toolshed.g2.bx.psu.edu"
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196 },
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197 "tool_state": "{\"operations\": \"[{\\\"__index__\\\": 0, \\\"operation\\\": {\\\"window_size\\\": \\\"4\\\", \\\"name\\\": \\\"SLIDINGWINDOW\\\", \\\"__current_case__\\\": 0, \\\"required_quality\\\": \\\"20\\\"}}]\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"paired_end\": \"{\\\"is_paired_end\\\": \\\"true\\\", \\\"paired_input_type_conditional\\\": {\\\"paired_input_type\\\": \\\"pair_of_files\\\", \\\"fastq_r1_in\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 0, \\\"fastq_r2_in\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}, \\\"__current_case__\\\": 1}\", \"illuminaclip\": \"{\\\"do_illuminaclip\\\": \\\"false\\\", \\\"__current_case__\\\": 1}\"}",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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198 "tool_version": "0.32.3",
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199 "type": "tool",
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200 "uuid": "0d5a87ee-c6a3-4bd1-b416-226d0e4783ab",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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201 "workflow_outputs": [
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202 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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203 "label": null,
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204 "output_name": "fastq_out_r1_paired",
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205 "uuid": "6e06861e-a08e-4fbf-bdd6-daa51499d669"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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206 },
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207 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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208 "label": null,
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209 "output_name": "fastq_out_r2_paired",
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210 "uuid": "1b2d0dd4-d1ce-4886-b300-8df03d3918fa"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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211 }
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212 ]
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213 },
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214 "5": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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215 "annotation": "",
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216 "content_id": "toolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snp_caller/0.1.0",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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217 "id": 5,
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218 "input_connections": {
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219 "input1": {
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220 "id": 3,
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221 "output_name": "output"
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222 }
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223 },
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224 "inputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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225 {
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226 "description": "runtime parameter for tool Snip Finder",
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227 "name": "sam_type"
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228 },
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229 {
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230 "description": "runtime parameter for tool Snip Finder",
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231 "name": "input1"
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232 }
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233 ],
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234 "label": null,
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235 "name": "Snip Finder",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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236 "outputs": [
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237 {
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238 "name": "output1",
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239 "type": "tabular"
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240 }
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241 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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242 "position": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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243 "left": 1368,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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244 "top": 551
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245 },
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246 "post_job_actions": {},
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247 "tool_errors": null,
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248 "tool_id": "toolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snp_caller/0.1.0",
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249 "tool_shed_repository": {
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250 "changeset_revision": "d9be5a7e70f5",
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251 "name": "snipfinder",
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252 "owner": "chrisd",
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253 "tool_shed": "toolshed.g2.bx.psu.edu"
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254 },
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255 "tool_state": "{\"sam_type\": \"{\\\"best\\\": \\\"false\\\", \\\"mode\\\": \\\"paired_end\\\", \\\"__current_case__\\\": 1, \\\"sampe_input2\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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256 "tool_version": "0.1.0",
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257 "type": "tool",
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258 "uuid": "e4564c96-a500-4017-a222-fc0e55a23b20",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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259 "workflow_outputs": [
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260 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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261 "label": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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262 "output_name": "output1",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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263 "uuid": "44843c44-7cf5-4738-9b48-60ad16b8d915"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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264 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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265 ]
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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266 },
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267 "6": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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268 "annotation": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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269 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1",
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270 "id": 6,
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271 "input_connections": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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272 "input_type|fastq_input1": {
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273 "id": 4,
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274 "output_name": "fastq_out_r1_paired"
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275 },
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276 "input_type|fastq_input2": {
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277 "id": 4,
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278 "output_name": "fastq_out_r2_paired"
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279 },
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280 "reference_source|ref_file": {
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281 "id": 2,
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282 "output_name": "output"
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283 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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284 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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285 "inputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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286 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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287 "description": "runtime parameter for tool Map with BWA",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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288 "name": "input_type"
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289 },
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290 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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291 "description": "runtime parameter for tool Map with BWA",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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292 "name": "input_type"
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293 },
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294 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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295 "description": "runtime parameter for tool Map with BWA",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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296 "name": "reference_source"
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297 }
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298 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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299 "label": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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300 "name": "Map with BWA",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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301 "outputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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302 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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303 "name": "bam_output",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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304 "type": "bam"
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305 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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306 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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307 "position": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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308 "left": 772.5,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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309 "top": 306
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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310 },
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311 "post_job_actions": {},
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312 "tool_errors": null,
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313 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1",
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314 "tool_shed_repository": {
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315 "changeset_revision": "546ada4a9f43",
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316 "name": "bwa",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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317 "owner": "devteam",
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318 "tool_shed": "toolshed.g2.bx.psu.edu"
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319 },
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320 "tool_state": "{\"__page__\": 0, \"input_type\": \"{\\\"adv_pe_options\\\": {\\\"__current_case__\\\": 1, \\\"adv_pe_options_selector\\\": \\\"do_not_set\\\"}, \\\"fastq_input2\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 0, \\\"input_type_selector\\\": \\\"paired\\\", \\\"fastq_input1\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"__rerun_remap_job_id__\": null, \"rg\": \"{\\\"rg_selector\\\": \\\"do_not_set\\\", \\\"__current_case__\\\": 3}\", \"analysis_type\": \"{\\\"analysis_type_selector\\\": \\\"illumina\\\", \\\"__current_case__\\\": 0}\", \"reference_source\": \"{\\\"ref_file\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"reference_source_selector\\\": \\\"history\\\", \\\"__current_case__\\\": 1, \\\"index_a\\\": \\\"auto\\\"}\"}",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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321 "tool_version": "0.7.12.1",
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322 "type": "tool",
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323 "uuid": "880e395c-e063-4ae9-803c-b1961ef0a4fd",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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324 "workflow_outputs": [
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325 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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326 "label": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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327 "output_name": "bam_output",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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328 "uuid": "8b9ad567-40bb-4533-9342-ca2c7a57326a"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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329 }
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330 ]
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331 },
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332 "7": {
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339 "output_name": "bam_output"
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340 }
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341 },
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346 }
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349 "name": "Samtools flag_filter",
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351 {
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354 }
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356 "position": {
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359 },
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360 "post_job_actions": {},
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361 "tool_errors": null,
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362 "tool_id": "toolshed.g2.bx.psu.edu/repos/brenninc/samtools_flag_filter_1_2/samtools_flag_filter/0.1",
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363 "tool_shed_repository": {
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364 "changeset_revision": "97bb72be07f9",
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365 "name": "samtools_flag_filter_1_2",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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366 "owner": "brenninc",
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367 "tool_shed": "toolshed.g2.bx.psu.edu"
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368 },
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369 "tool_state": "{\"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"bits\": \"[{\\\"__index__\\\": 0, \\\"flag\\\": \\\"0x0004\\\", \\\"state\\\": \\\"f\\\"}]\", \"__page__\": 0}",
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370 "tool_version": "0.1",
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371 "type": "tool",
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372 "uuid": "aa177899-8618-4afb-b484-e2a9eb616f04",
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373 "workflow_outputs": [
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374 {
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375 "label": null,
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376 "output_name": "output",
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377 "uuid": "a960b5e7-cb47-4afb-9688-3a787b4813a5"
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378 }
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379 ]
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380 },
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381 "8": {
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382 "annotation": "",
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383 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1",
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384 "id": 8,
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385 "input_connections": {
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386 "input_type|bam_input": {
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387 "id": 7,
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chrisd
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388 "output_name": "output"
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389 },
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390 "reference_source|ref_file": {
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391 "id": 3,
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392 "output_name": "output"
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393 }
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chrisd
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394 },
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395 "inputs": [
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396 {
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397 "description": "runtime parameter for tool Map with BWA",
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398 "name": "input_type"
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399 },
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400 {
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401 "description": "runtime parameter for tool Map with BWA",
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402 "name": "reference_source"
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chrisd
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403 }
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chrisd
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404 ],
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chrisd
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405 "label": null,
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chrisd
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406 "name": "Map with BWA",
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chrisd
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407 "outputs": [
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chrisd
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diff changeset
408 {
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chrisd
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409 "name": "bam_output",
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chrisd
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410 "type": "bam"
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chrisd
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diff changeset
411 }
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chrisd
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412 ],
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chrisd
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413 "position": {
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414 "left": 1279.5,
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chrisd
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415 "top": 305
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chrisd
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416 },
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diff changeset
417 "post_job_actions": {},
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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diff changeset
418 "tool_errors": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
419 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
420 "tool_shed_repository": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
421 "changeset_revision": "546ada4a9f43",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
422 "name": "bwa",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
423 "owner": "devteam",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
424 "tool_shed": "toolshed.g2.bx.psu.edu"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
425 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
426 "tool_state": "{\"__page__\": 0, \"input_type\": \"{\\\"bam_input\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 3, \\\"input_type_selector\\\": \\\"paired_bam\\\", \\\"adv_bam_pe_options\\\": {\\\"__current_case__\\\": 1, \\\"adv_pe_options_selector\\\": \\\"do_not_set\\\"}}\", \"__rerun_remap_job_id__\": null, \"rg\": \"{\\\"rg_selector\\\": \\\"do_not_set\\\", \\\"__current_case__\\\": 3}\", \"analysis_type\": \"{\\\"analysis_type_selector\\\": \\\"illumina\\\", \\\"__current_case__\\\": 0}\", \"reference_source\": \"{\\\"ref_file\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"reference_source_selector\\\": \\\"history\\\", \\\"__current_case__\\\": 1, \\\"index_a\\\": \\\"auto\\\"}\"}",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
427 "tool_version": "0.7.12.1",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
428 "type": "tool",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
429 "uuid": "91a7471e-ee8d-4f6f-8002-d0914dd8df57",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
430 "workflow_outputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
431 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
432 "label": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
433 "output_name": "bam_output",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
434 "uuid": "70c657a7-61ce-4c52-a5b4-564eddd9e79e"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
435 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
436 ]
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
437 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
438 "9": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
439 "annotation": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
440 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
441 "id": 9,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
442 "input_connections": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
443 "input1": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
444 "id": 8,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
445 "output_name": "bam_output"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
446 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
447 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
448 "inputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
449 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
450 "description": "runtime parameter for tool Sort",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
451 "name": "input1"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
452 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
453 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
454 "label": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
455 "name": "Sort",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
456 "outputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
457 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
458 "name": "output1",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
459 "type": "bam"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
460 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
461 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
462 "position": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
463 "left": 1506,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
464 "top": 306
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
465 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
466 "post_job_actions": {},
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
467 "tool_errors": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
468 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
469 "tool_shed_repository": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
470 "changeset_revision": "a430da4f04cd",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
471 "name": "samtools_sort",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
472 "owner": "devteam",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
473 "tool_shed": "toolshed.g2.bx.psu.edu"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
474 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
475 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"sort_mode\": \"\\\"-n\\\"\"}",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
476 "tool_version": "2.0",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
477 "type": "tool",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
478 "uuid": "62d071ac-483d-43d0-a7a2-59cd7c41ee39",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
479 "workflow_outputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
480 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
481 "label": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
482 "output_name": "output1",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
483 "uuid": "b6efbbfd-4e6b-410c-a99d-f8dd4e600ea9"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
484 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
485 ]
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
486 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
487 "10": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
488 "annotation": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
489 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
490 "id": 10,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
491 "input_connections": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
492 "input1": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
493 "id": 9,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
494 "output_name": "output1"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
495 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
496 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
497 "inputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
498 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
499 "description": "runtime parameter for tool BAM-to-SAM",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
500 "name": "input1"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
501 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
502 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
503 "label": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
504 "name": "BAM-to-SAM",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
505 "outputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
506 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
507 "name": "output1",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
508 "type": "sam"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
509 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
510 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
511 "position": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
512 "left": 1507.5,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff changeset
513 "top": 433
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
514 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
515 "post_job_actions": {},
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
516 "tool_errors": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
517 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
518 "tool_shed_repository": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
519 "changeset_revision": "af7c50162f0b",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
520 "name": "bam_to_sam",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
521 "owner": "devteam",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
522 "tool_shed": "toolshed.g2.bx.psu.edu"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
523 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
524 "tool_state": "{\"header\": \"\\\"-h\\\"\", \"__rerun_remap_job_id__\": null, \"input1\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__page__\": 0}",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
525 "tool_version": "2.0",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
526 "type": "tool",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
527 "uuid": "5076f37b-5da6-44a3-a3b2-f4172d547dc3",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
528 "workflow_outputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
529 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
530 "label": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
531 "output_name": "output1",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
532 "uuid": "4b52f2d0-1a66-408a-bc99-0da79cc8542f"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
533 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
534 ]
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
535 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
536 "11": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
537 "annotation": "",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
538 "content_id": "toolshed.g2.bx.psu.edu/repos/chrisd/coverage_sampler/gene_fraction/0.1.0",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
539 "id": 11,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
540 "input_connections": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
541 "input1": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
542 "id": 3,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
543 "output_name": "output"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
544 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
545 "input2": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
546 "id": 10,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
547 "output_name": "output1"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
548 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
549 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
550 "inputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
551 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
552 "description": "runtime parameter for tool Coverage Sampler",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
553 "name": "input2"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
554 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
555 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
556 "description": "runtime parameter for tool Coverage Sampler",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
557 "name": "input1"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
558 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
559 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
560 "label": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
561 "name": "Coverage Sampler",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
562 "outputs": [
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
563 {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
564 "name": "output1",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
565 "type": "tabular"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
566 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
567 ],
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
568 "position": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
569 "left": 1618.5,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
570 "top": 553
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
571 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
572 "post_job_actions": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
573 "HideDatasetActionoutput1": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
574 "action_arguments": {},
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
575 "action_type": "HideDatasetAction",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
576 "output_name": "output1"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
577 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
578 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
579 "tool_errors": null,
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
580 "tool_id": "toolshed.g2.bx.psu.edu/repos/chrisd/coverage_sampler/gene_fraction/0.1.0",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
581 "tool_shed_repository": {
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
582 "changeset_revision": "72901052a829",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff changeset
583 "name": "coverage_sampler",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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584 "owner": "chrisd",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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585 "tool_shed": "toolshed.g2.bx.psu.edu"
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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586 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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587 "tool_state": "{\"input2\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__page__\": 0, \"input1\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"min\": \"\\\"5\\\"\", \"max\": \"\\\"100\\\"\", \"__rerun_remap_job_id__\": null, \"samples\": \"\\\"1\\\"\", \"skip\": \"\\\"5\\\"\", \"threshold\": \"\\\"80\\\"\"}",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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588 "tool_version": "0.1.0",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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589 "type": "tool",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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590 "uuid": "a79d4e7c-dc9c-45fc-bc5f-e07c8289dc6c",
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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591 "workflow_outputs": []
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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592 }
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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593 },
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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594 "uuid": "882a41f1-f16c-4e06-a19b-21a5ffc1fd36"
6
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595 }