Mercurial > repos > chrisd > resistome_analyzer

annotate resistome_analyzer.xml @ 0:6e3417efcef3 draft

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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
author chrisd
date Sun, 09 Oct 2016 07:06:21 -0400
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children c9fbf44a96f7
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6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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1 <tool id="resistome_analyzer" name="ResistomeAnalyzer" version="0.1.0">
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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2 <description>A simple tool for analyzing the resistome of metagenomic sequence data</description>
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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3 <requirements>
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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4 <requirement type="package" version="0.1">resistomeanalyzer</requirement>
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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5 </requirements>
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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6 <stdio>
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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7 <exit_code range="1:" />
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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8 </stdio>
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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9 <command><![CDATA[
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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10 resistome
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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11 -ref_fp $reference
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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12 -annot_fp $annotation
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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13 -sam_fp $sam
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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14 -gene_fp $gene
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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15 -mech_fp $mech
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
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16 -class_fp $class
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
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17 -group_fp $group
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
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18 ]]></command>
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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19 <inputs>
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
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20 <param type="data" name="reference" format="fasta" label="Reference sequence" />
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
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21 <param type="data" name="sam" format="sam" label="SAM file" />
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
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22 <param type="data" name="annotation" format="csv" label="Annotation file" />
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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23 </inputs>
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
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24 <outputs>
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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25 <data name="gene" format="tabular" />
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
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26 <data name="mech" format="tabular" />
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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27 <data name="class" format="tabular" />
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
chrisd
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28 <data name="group" format="tabular" />
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
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29 </outputs>
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
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30 <citations>
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
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31 </citations>
6e3417efcef3 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
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32 </tool>