Mercurial > repos > chrisd > resistome_analyzer
comparison resistome_analyzer.xml @ 0:6e3417efcef3 draft
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit e5dfdf9aa83af409ee99a0259ceb23b305b8f949-dirty
| author | chrisd |
|---|---|
| date | Sun, 09 Oct 2016 07:06:21 -0400 |
| parents | |
| children | c9fbf44a96f7 |
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| -1:000000000000 | 0:6e3417efcef3 |
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| 1 <tool id="resistome_analyzer" name="ResistomeAnalyzer" version="0.1.0"> | |
| 2 <description>A simple tool for analyzing the resistome of metagenomic sequence data</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.1">resistomeanalyzer</requirement> | |
| 5 </requirements> | |
| 6 <stdio> | |
| 7 <exit_code range="1:" /> | |
| 8 </stdio> | |
| 9 <command><![CDATA[ | |
| 10 resistome | |
| 11 -ref_fp $reference | |
| 12 -annot_fp $annotation | |
| 13 -sam_fp $sam | |
| 14 -gene_fp $gene | |
| 15 -mech_fp $mech | |
| 16 -class_fp $class | |
| 17 -group_fp $group | |
| 18 ]]></command> | |
| 19 <inputs> | |
| 20 <param type="data" name="reference" format="fasta" label="Reference sequence" /> | |
| 21 <param type="data" name="sam" format="sam" label="SAM file" /> | |
| 22 <param type="data" name="annotation" format="csv" label="Annotation file" /> | |
| 23 </inputs> | |
| 24 <outputs> | |
| 25 <data name="gene" format="tabular" /> | |
| 26 <data name="mech" format="tabular" /> | |
| 27 <data name="class" format="tabular" /> | |
| 28 <data name="group" format="tabular" /> | |
| 29 </outputs> | |
| 30 <citations> | |
| 31 </citations> | |
| 32 </tool> |