Mercurial > repos > cjav > split_by_barcode

changeset 2:ee8699b10e83 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Updated to use ngs-tools 0.1.8 with better exception handling and proper writing of error messages to sdterr.
author cjav
date Tue, 15 Oct 2013 13:08:50 -0400
parents b423473c0131
children
files ngs-tools_split_by_barcode.xml tool_dependencies.xml
diffstat 2 files changed, 7 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/ngs-tools_split_by_barcode.xml	Tue Sep 24 11:42:15 2013 -0400
+++ b/ngs-tools_split_by_barcode.xml	Tue Oct 15 13:08:50 2013 -0400
@@ -1,7 +1,7 @@
 <tool id="ngs-tools_split_by_barcode" name="Barcode Splitter (ngs-tools)" force_history_refresh="True" version="1.0.1">
 	<description></description>
     <requirements>
-        <requirement type="package" version="0.1.6">ngs-tools</requirement>
+        <requirement type="package" version="0.1.8">ngs-tools</requirement>
     </requirements>
     <command>
         ngs-tools split-by-barcode
@@ -37,7 +37,7 @@
         <param format="tabular" name="barcode_index" type="data" label="Barcodes index" help="See below for description." />
         <param name="barcode_length" type="integer" size="3" value="11" label="Barcode length" help="Please specify the barcode length." />
         <param name="barcodes" type="text" label="Barcodes to use" help="Comma separated list of barcodes to use. By default all barcodes in the 'Barcodes index' are used." />
-        <param name="trim_barcode" type="select" label="Trim the barcode" help="By default barcodes are trimmed from the resulting splitted datasets">
+        <param name="trim_barcode" type="select" label="Trim the barcode" help="By default barcodes are trimmed from the resulting split datasets">
             <option value="" selected="true">Yes</option>
             <option value="--keep-barcode">No</option>
         </param>
@@ -45,9 +45,9 @@
 	</inputs>
 	
 	<outputs>
-		<data format="interval" name="output1" />
+		<data format="tabular" name="output1" />
 	</outputs>
-<help>
+    <help>
 
 **What it does**
 
@@ -80,5 +80,5 @@
 
  .. __: https://github.com/cjav/ngs-tools/
  
-</help>
+    </help>
 </tool>
--- a/tool_dependencies.xml	Tue Sep 24 11:42:15 2013 -0400
+++ b/tool_dependencies.xml	Tue Oct 15 13:08:50 2013 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="ngs-tools" version="0.1.6">
-        <repository changeset_revision="b765dd7a4187" name="package_ngs_tools_0_1_6" owner="cjav" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
+    <package name="ngs-tools" version="0.1.8">
+        <repository changeset_revision="6106ecedea92" name="package_ngs_tools_0_1_8" owner="cjav" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>