Mercurial > repos > clifinder > clifinder
changeset 17:3e3370387441 draft
"planemo upload for repository https://github.com/GReD-Clermont/CLIFinder/ commit 94d5cab008ee4422a8ba63468532d3bb552abcd5"
| author | clifinder |
|---|---|
| date | Fri, 14 Feb 2020 17:03:24 -0500 |
| parents | 40695c10cfbd |
| children | 3471a9785135 |
| files | script/CLIFinder.pl |
| diffstat | 1 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/script/CLIFinder.pl Thu Feb 13 08:37:34 2020 -0500 +++ b/script/CLIFinder.pl Fri Feb 14 17:03:24 2020 -0500 @@ -528,12 +528,11 @@ ##looking for flag of the alignment and keep only good reads## ##Find if it aligns on R1 or on R2## - - if ($line[1] == 73 || $line[1] == 89 || $line[1] == 117 || $line[1] == 69 || $line[1] == 133 || $line[1] == 181 || $line[1] == 153|| $line[1] == 137) + unless($line[1] & 2 || ($line[1] & 4 && $line[1] & 8)) { if ( $Bdir == 0 - || ($Bdir == 1 && (($line[1] & 064 && $line[1] & 8) || ($line[1] & 128 && $line[1] & 4))) - || ($Bdir == 2 && (($line[1] & 128 && $line[1] & 8) || ($line[1] & 064 && $line[1] & 4))) ) + || ($Bdir == 1 && (($line[1] & 64 && $line[1] & 8) || ($line[1] & 128 && $line[1] & 4))) + || ($Bdir == 2 && (($line[1] & 128 && $line[1] & 8) || ($line[1] & 64 && $line[1] & 4))) ) { $cmp++; $sequence = $line[9];