Mercurial > repos > clifinder > clifinder

changeset 19:5c16e8ddff78 draft

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"planemo upload for repository https://github.com/GReD-Clermont/CLIFinder/ commit 4fc032b0df665967f5bdd74f773a01a9cd10fa5e"
author clifinder
date Wed, 04 Mar 2020 05:40:37 -0500
parents 3471a9785135
children f25d12179c6c
files script/CLIFinder.pl
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/script/CLIFinder.pl	Wed Feb 26 19:07:36 2020 -0500
+++ b/script/CLIFinder.pl	Wed Mar 04 05:40:37 2020 -0500
@@ -603,7 +603,7 @@
   
   ##Launch RepeatMasker on fasta file
   
-  `RepeatMasker -s -pa $threads -dir $repout -engine hmmer -species human $fa`;
+  `RepeatMasker -s -pa $threads -dir $repout -species human $fa`;
   my $repfile = $repout.$name.".fa.out";
   open (my $rep, $repfile) || die "Cannot open $repfile $!\n";
   while(<$rep>)