Mercurial > repos > climate > cdo_info
comparison macros_operations.xml @ 0:8e0ae5c594e7 draft default tip
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/cdo commit da614bb8e3e9b19a5167ff19b625a71d9976108a"
author | climate |
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date | Sat, 15 Jan 2022 23:20:26 +0000 |
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-1:000000000000 | 0:8e0ae5c594e7 |
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1 <macros> | |
2 <xml name="stat_selection"> | |
3 <param name="stat" type="select" label="Select statistical function" multiple="false"> | |
4 <option value="min">minimum</option> | |
5 <option value="max">maximum</option> | |
6 <option value="sum">sum</option> | |
7 <option value="mean">mean</option> | |
8 <option value="avg">average</option> | |
9 <option value="var">variance</option> | |
10 <option value="std">standard deviation</option> | |
11 </param> | |
12 </xml> | |
13 <xml name="add_cdo_input"> | |
14 <param name="add_file" type="data" optional="true" label="Additional input file" format="netcdf"/> | |
15 </xml> | |
16 <xml name="cdo_option"> | |
17 <conditional name="option_type"> | |
18 <param name="add_opt" type="select" label="Provide cdo options" multiple="false"> | |
19 <option value="-a">Generate an absolute time axis (-a)</option> | |
20 <option value="--cmor">CMOR conform NetCDF output (--cmor)</option> | |
21 <option value="-f">-Output format (-f format)</option> | |
22 <option value="-g">-g grid</option> | |
23 <option value="-gf">-g grid filename</option> | |
24 <option value="-M">-Indicate that the I/O streams have missing values (-M)</option> | |
25 <option value="-m">Set the default missing value. Default is-9e+33 (-m missval)</option> | |
26 <option value="--percentile">Percentile method (--percentile method)</option> | |
27 <option value="--reduce_dim">Reduce NetCDF dimensions (--reduce_dim)</option> | |
28 <option value="-R">Convert GRIB1 data from reduced to regular grid (-R)</option> | |
29 <option value="--seed">Seed for a new sequence of pseudo-random numbers (--seed seed)</option> | |
30 <option value="--sortname">Alphanumeric sorting of NetCDF parameter names (--sortname)</option> | |
31 <option value="-r">Generate a relative time axis (-r)</option> | |
32 </param> | |
33 <when value="-a"/> | |
34 <when value="--cmor"/> | |
35 <when value="-f"> | |
36 <param name="output_format" type="select" label="Select output format" multiple="false"> | |
37 <option value="nc4">NetCDF-4 (HDF5)</option> | |
38 <option value="nc4c">NetCDF-4 classic</option> | |
39 <option value="nc5">NetCDF version 5</option> | |
40 </param> | |
41 </when> | |
42 <when value="-g"> | |
43 <param name="grid" type="text" label="Grid" help="(option -g grid)"/> | |
44 </when> | |
45 <when value="-gf"> | |
46 <param name="gridfile" type="data" label="Grid file" help="(option -g gridfile)" format="txt"/> | |
47 </when> | |
48 <when value="-M"/> | |
49 <when value="-m"> | |
50 <param name="missval" type="float" value="-9e+33" label="Set the default missing value"/> | |
51 </when> | |
52 <when value="--percentile"> | |
53 <param name="percentile" type="select" label="Percentile method"> | |
54 <option value="nrank">nrank</option> | |
55 <option value="nist">nist</option> | |
56 <option value="rtype8">rtype8</option> | |
57 <option value="numpy">numpy</option> | |
58 <option value="numpy_lower">numpy_lower</option> | |
59 <option value="numpy_higher">numpy_higher</option> | |
60 <option value="numpy_nearest">numpy_nearest</option> | |
61 </param> | |
62 </when> | |
63 <when value="--reduce_dim"/> | |
64 <when value="-R"/> | |
65 <when value="--seed"> | |
66 <param name="seed" type="float" value="0.0" label="Seed for a new sequence of pseudo-random numbers"/> | |
67 </when> | |
68 <when value="--sortname"/> | |
69 <when value="-r"/> | |
70 </conditional> | |
71 </xml> | |
72 <xml name="cdo_operator"> | |
73 <conditional name="operator"> | |
74 <param name="opt" type="select" label="Select cdo operator" multiple="false"> | |
75 <option value="copy">copy (Copy datasets)</option> | |
76 <option value="cat">cat (Concatenate datasets)</option> | |
77 <option value="replace">replace (Replace variables)</option> | |
78 <option value="duplicate">duplicate (Duplicates a dataset)</option> | |
79 <option value="mergegrid">mergegrid (Merge grid)</option> | |
80 <option value="merge">merge (Merge datasets with different fields)</option> | |
81 <option value="mergetime">mergetime (Merge datasets sorted by date and time)</option> | |
82 <option value="splitcode">splitcode (Split code numbers)</option> | |
83 <option value="splitparam">splitparam (Split parameter identifiers)</option> | |
84 <option value="splitname">splitname (Split variable names)</option> | |
85 <option value="splitlevel">splitlevel (Split levels)</option> | |
86 <option value="splitgrid">splitgrid (Split grids)</option> | |
87 <option value="splitzaxis">splitzaxis (Split z-axes)</option> | |
88 <option value="splittabnum">splittabnum (Split parameter table numbers)</option> | |
89 <option value="splithour">splithour (Split hours)</option> | |
90 <option value="splitday">splitday (Split days)</option> | |
91 <option value="splitseas">splitseas (Split seasons)</option> | |
92 <option value="splityear">splityear (Split years)</option> | |
93 <option value="splityearmon">splityearmon (Split in years and months)</option> | |
94 <option value="splitmon">splitmon (Split months)</option> | |
95 <option value="splitsel">splitsel (Split time selection)</option> | |
96 <option value="distgrid">distgrid (Distribute horizontal grid)</option> | |
97 <option value="collgrid">collgrid (Collect horizontal grid)</option> | |
98 <option value="select">select (Select all fields with parameters in a user given list.)</option> | |
99 <option value="delete">delete (Delete all fields with parameters in a user given list.)</option> | |
100 <option value="selname">selname (Select parameters by name)</option> | |
101 <option value="delname">delname (Delete parameters by name)</option> | |
102 <option value="seltimestep">seltimestep (Select timesteps)</option> | |
103 <option value="sellonlatbox">sellonlatbox (Select a latitude/longitude box)</option> | |
104 <option value="invertlat">invertlat (Invert latitudes)</option> | |
105 <option value="addc">addc (Add a constant)</option> | |
106 <option value="subc">subc (Substract a constant)</option> | |
107 <option value="mulc">mulc (Multiply with a constant)</option> | |
108 <option value="divc">divc (Divide with a constant)</option> | |
109 <option value="expr">expr (Evaluate expressions)</option> | |
110 <option value="ml2pl">ml2pl (Model to pressure level interpolation)</option> | |
111 <option value="ml2hl">ml2hl (Model to height level interpolation)</option> | |
112 <option value="intlevel">intlevel (Linear level interpolation)</option> | |
113 <option value="sp2gp">sp2gp (Spectral to gridpoint)</option> | |
114 <option value="gp2sp">gp2sp (Gridpoint to spectral)</option> | |
115 <option value="ens">Ensemble statistics</option> | |
116 <option value="zon">Zonal statistics</option> | |
117 <option value="tim">Time statistics</option> | |
118 <option value="vert">Vertical statistics</option> | |
119 <option value="day">Daily statistics</option> | |
120 <option value="year">Yearly statistics</option> | |
121 <option value="mon">Monthly statistics</option> | |
122 <option value="seas">Seasonal statistics</option> | |
123 <option value="fld">Statistical values over a field</option> | |
124 <option value="add">Add two fields </option> | |
125 <option value="sub">Subtract two fields </option> | |
126 <option value="mul">Multiply two fields </option> | |
127 <option value="div">Divide two fields </option> | |
128 <option value="min">Minimum of two fields </option> | |
129 <option value="max">Maximum of two fields </option> | |
130 <option value="setattribute">Set/modify attributes</option> | |
131 </param> | |
132 <when value="copy"> | |
133 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
134 </when> | |
135 <when value="cat"> | |
136 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
137 </when> | |
138 <when value="replace"> | |
139 <param name="add_file" type="data" multiple="true" min="0" max="2" label="Additional input file" format="netcdf"/> | |
140 </when> | |
141 <when value="duplicate"> | |
142 <param name="ndup" type="integer" label="Number of duplicates" value="2"/> | |
143 <expand macro="add_cdo_input"/> | |
144 </when> | |
145 <when value="mergegrid"> | |
146 <expand macro="add_cdo_input"/> | |
147 </when> | |
148 <when value="merge"> | |
149 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
150 </when> | |
151 <when value="mergetime"> | |
152 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
153 </when> | |
154 <when value="splitcode"> | |
155 <expand macro="add_cdo_input"/> | |
156 </when> | |
157 <when value="splitparam"> | |
158 <expand macro="add_cdo_input"/> | |
159 </when> | |
160 <when value="splitname"> | |
161 <expand macro="add_cdo_input"/> | |
162 </when> | |
163 <when value="splitlevel"> | |
164 <expand macro="add_cdo_input"/> | |
165 </when> | |
166 <when value="splitgrid"> | |
167 <expand macro="add_cdo_input"/> | |
168 </when> | |
169 <when value="splitzaxis"> | |
170 <expand macro="add_cdo_input"/> | |
171 </when> | |
172 <when value="splittabnum"> | |
173 <expand macro="add_cdo_input"/> | |
174 </when> | |
175 <when value="splithour"> | |
176 <expand macro="add_cdo_input"/> | |
177 </when> | |
178 <when value="splitday"> | |
179 <expand macro="add_cdo_input"/> | |
180 </when> | |
181 <when value="splitseas"> | |
182 <expand macro="add_cdo_input"/> | |
183 </when> | |
184 <when value="splityear"> | |
185 <expand macro="add_cdo_input"/> | |
186 </when> | |
187 <when value="splityearmon"> | |
188 <expand macro="add_cdo_input"/> | |
189 </when> | |
190 <when value="splitmon"> | |
191 <expand macro="add_cdo_input"/> | |
192 </when> | |
193 <when value="splitsel"> | |
194 <param name="nset" type="integer" value="0" label="Number of input timesteps for each output file"/> | |
195 <param name="noffset" type="integer" optional="true" label="Number of input timesteps skipped before the first timestep range (optional)"/> | |
196 <param name="nskip" type="integer" optional="true" label="Number of input timesteps skipped between timestep ranges (optional)"/> | |
197 <expand macro="add_cdo_input"/> | |
198 </when> | |
199 <when value="distgrid"> | |
200 <param name="nx" type="integer" value="1" label="Number of regions in x direction, or number of pieces for unstructured grids"/> | |
201 <param name="ny" type="integer" label="Number of regions in y direction" value="1"/> | |
202 <expand macro="add_cdo_input"/> | |
203 </when> | |
204 <when value="collgrid"> | |
205 <param name="nx" type="integer" label="Number of regions in x direction" optional="true"/> | |
206 <param name="names" type="text" label="Comma-separated list of variable names" optional="true"/> | |
207 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
208 </when> | |
209 <when value="select"> | |
210 <param name="params" type="text" value="" label="Parameters for selection"/> | |
211 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
212 </when> | |
213 <when value="delete"> | |
214 <param name="params" type="text" label="Parameters for deletion"/> | |
215 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
216 </when> | |
217 <when value="selname"> | |
218 <param name="params" type="text" value="" label="Parameters for selection"/> | |
219 <expand macro="add_cdo_input"/> | |
220 </when> | |
221 <when value="delname"> | |
222 <param name="params" type="text" value="" label="Parameters for selection"/> | |
223 <expand macro="add_cdo_input"/> | |
224 </when> | |
225 <when value="seltimestep"> | |
226 <param name="params" type="text" value="" label="Timesteps for selection"/> | |
227 <expand macro="add_cdo_input"/> | |
228 </when> | |
229 <when value="sellonlatbox"> | |
230 <param name="params" type="text" value="" label="Parameters for latitude/longitude box in the form of lon1,lon2,lat1,lat2)"/> | |
231 <expand macro="add_cdo_input"/> | |
232 </when> | |
233 <when value="invertlat"> | |
234 <expand macro="add_cdo_input"/> | |
235 </when> | |
236 <when value="addc"> | |
237 <param name="const_value" type="float" label="Constant value to add to the fields" value="1"/> | |
238 <expand macro="add_cdo_input"/> | |
239 </when> | |
240 <when value="subc"> | |
241 <param name="const_value" type="float" label="Constant value to substract to the fields" value="1"/> | |
242 <expand macro="add_cdo_input"/> | |
243 </when> | |
244 <when value="mulc"> | |
245 <param name="const_value" type="float" label="Constant value to scale the fields" value="1"/> | |
246 <expand macro="add_cdo_input"/> | |
247 </when> | |
248 <when value="divc"> | |
249 <param name="const_value" type="float" label="Constant value to scale the fields" value="1"/> | |
250 <expand macro="add_cdo_input"/> | |
251 </when> | |
252 <when value="expr"> | |
253 <param name="params" type="text" value="" label="Expression for evaluation"/> | |
254 <expand macro="add_cdo_input"/> | |
255 </when> | |
256 <when value="ml2pl"> | |
257 <param name="params" type="text" value="" label="Pressure levels (comma separated)"/> | |
258 <expand macro="add_cdo_input"/> | |
259 </when> | |
260 <when value="ml2hl"> | |
261 <param name="params" type="text" value="" label="Height levels (comma separated)"/> | |
262 <expand macro="add_cdo_input"/> | |
263 </when> | |
264 <when value="intlevel"> | |
265 <param name="params" type="text" value="" label="Levels (comma separated)"/> | |
266 <expand macro="add_cdo_input"/> | |
267 </when> | |
268 <when value="sp2gp"> | |
269 <param name="trunc" type="integer" optional="true" value="" label="New spectral resolution"/> | |
270 <expand macro="add_cdo_input"/> | |
271 </when> | |
272 <when value="gp2sp"> | |
273 <param name="trunc" type="integer" optional="true" label="New spectral resolution"/> | |
274 <expand macro="add_cdo_input"/> | |
275 </when> | |
276 <when value="ens"> | |
277 <expand macro="stat_selection" /> | |
278 <expand macro="add_cdo_input"/> | |
279 </when> | |
280 <when value="zon"> | |
281 <expand macro="stat_selection" /> | |
282 <expand macro="add_cdo_input"/> | |
283 </when> | |
284 <when value="tim"> | |
285 <expand macro="stat_selection" /> | |
286 <expand macro="add_cdo_input"/> | |
287 </when> | |
288 <when value="vert"> | |
289 <expand macro="stat_selection" /> | |
290 <expand macro="add_cdo_input"/> | |
291 </when> | |
292 <when value="day"> | |
293 <expand macro="stat_selection" /> | |
294 <expand macro="add_cdo_input"/> | |
295 </when> | |
296 <when value="year"> | |
297 <expand macro="stat_selection" /> | |
298 <expand macro="add_cdo_input"/> | |
299 </when> | |
300 <when value="mon"> | |
301 <expand macro="stat_selection" /> | |
302 <expand macro="add_cdo_input"/> | |
303 </when> | |
304 <when value="seas"> | |
305 <expand macro="stat_selection" /> | |
306 <expand macro="add_cdo_input"/> | |
307 </when> | |
308 <when value="fld"> | |
309 <expand macro="stat_selection" /> | |
310 <expand macro="add_cdo_input"/> | |
311 </when> | |
312 <when value="add"> | |
313 <expand macro="add_cdo_input"/> | |
314 </when> | |
315 <when value="sub"> | |
316 <expand macro="add_cdo_input"/> | |
317 </when> | |
318 <when value="mul"> | |
319 <expand macro="add_cdo_input"/> | |
320 </when> | |
321 <when value="div"> | |
322 <expand macro="add_cdo_input"/> | |
323 </when> | |
324 <when value="min"> | |
325 <expand macro="add_cdo_input"/> | |
326 </when> | |
327 <when value="max"> | |
328 <expand macro="add_cdo_input"/> | |
329 </when> | |
330 <when value="setattribute"> | |
331 <param name="attr_file" type="data" format="txt" label="Text file containing the list of attributes (one per line)"/> | |
332 <expand macro="add_cdo_input"/> | |
333 </when> | |
334 </conditional> | |
335 </xml> | |
336 </macros> |