Mercurial > repos > climate > cdo_info
diff macros_operations.xml @ 0:8e0ae5c594e7 draft default tip
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/cdo commit da614bb8e3e9b19a5167ff19b625a71d9976108a"
author | climate |
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date | Sat, 15 Jan 2022 23:20:26 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros_operations.xml Sat Jan 15 23:20:26 2022 +0000 @@ -0,0 +1,336 @@ +<macros> + <xml name="stat_selection"> + <param name="stat" type="select" label="Select statistical function" multiple="false"> + <option value="min">minimum</option> + <option value="max">maximum</option> + <option value="sum">sum</option> + <option value="mean">mean</option> + <option value="avg">average</option> + <option value="var">variance</option> + <option value="std">standard deviation</option> + </param> + </xml> + <xml name="add_cdo_input"> + <param name="add_file" type="data" optional="true" label="Additional input file" format="netcdf"/> + </xml> + <xml name="cdo_option"> + <conditional name="option_type"> + <param name="add_opt" type="select" label="Provide cdo options" multiple="false"> + <option value="-a">Generate an absolute time axis (-a)</option> + <option value="--cmor">CMOR conform NetCDF output (--cmor)</option> + <option value="-f">-Output format (-f format)</option> + <option value="-g">-g grid</option> + <option value="-gf">-g grid filename</option> + <option value="-M">-Indicate that the I/O streams have missing values (-M)</option> + <option value="-m">Set the default missing value. Default is-9e+33 (-m missval)</option> + <option value="--percentile">Percentile method (--percentile method)</option> + <option value="--reduce_dim">Reduce NetCDF dimensions (--reduce_dim)</option> + <option value="-R">Convert GRIB1 data from reduced to regular grid (-R)</option> + <option value="--seed">Seed for a new sequence of pseudo-random numbers (--seed seed)</option> + <option value="--sortname">Alphanumeric sorting of NetCDF parameter names (--sortname)</option> + <option value="-r">Generate a relative time axis (-r)</option> + </param> + <when value="-a"/> + <when value="--cmor"/> + <when value="-f"> + <param name="output_format" type="select" label="Select output format" multiple="false"> + <option value="nc4">NetCDF-4 (HDF5)</option> + <option value="nc4c">NetCDF-4 classic</option> + <option value="nc5">NetCDF version 5</option> + </param> + </when> + <when value="-g"> + <param name="grid" type="text" label="Grid" help="(option -g grid)"/> + </when> + <when value="-gf"> + <param name="gridfile" type="data" label="Grid file" help="(option -g gridfile)" format="txt"/> + </when> + <when value="-M"/> + <when value="-m"> + <param name="missval" type="float" value="-9e+33" label="Set the default missing value"/> + </when> + <when value="--percentile"> + <param name="percentile" type="select" label="Percentile method"> + <option value="nrank">nrank</option> + <option value="nist">nist</option> + <option value="rtype8">rtype8</option> + <option value="numpy">numpy</option> + <option value="numpy_lower">numpy_lower</option> + <option value="numpy_higher">numpy_higher</option> + <option value="numpy_nearest">numpy_nearest</option> + </param> + </when> + <when value="--reduce_dim"/> + <when value="-R"/> + <when value="--seed"> + <param name="seed" type="float" value="0.0" label="Seed for a new sequence of pseudo-random numbers"/> + </when> + <when value="--sortname"/> + <when value="-r"/> + </conditional> + </xml> + <xml name="cdo_operator"> + <conditional name="operator"> + <param name="opt" type="select" label="Select cdo operator" multiple="false"> + <option value="copy">copy (Copy datasets)</option> + <option value="cat">cat (Concatenate datasets)</option> + <option value="replace">replace (Replace variables)</option> + <option value="duplicate">duplicate (Duplicates a dataset)</option> + <option value="mergegrid">mergegrid (Merge grid)</option> + <option value="merge">merge (Merge datasets with different fields)</option> + <option value="mergetime">mergetime (Merge datasets sorted by date and time)</option> + <option value="splitcode">splitcode (Split code numbers)</option> + <option value="splitparam">splitparam (Split parameter identifiers)</option> + <option value="splitname">splitname (Split variable names)</option> + <option value="splitlevel">splitlevel (Split levels)</option> + <option value="splitgrid">splitgrid (Split grids)</option> + <option value="splitzaxis">splitzaxis (Split z-axes)</option> + <option value="splittabnum">splittabnum (Split parameter table numbers)</option> + <option value="splithour">splithour (Split hours)</option> + <option value="splitday">splitday (Split days)</option> + <option value="splitseas">splitseas (Split seasons)</option> + <option value="splityear">splityear (Split years)</option> + <option value="splityearmon">splityearmon (Split in years and months)</option> + <option value="splitmon">splitmon (Split months)</option> + <option value="splitsel">splitsel (Split time selection)</option> + <option value="distgrid">distgrid (Distribute horizontal grid)</option> + <option value="collgrid">collgrid (Collect horizontal grid)</option> + <option value="select">select (Select all fields with parameters in a user given list.)</option> + <option value="delete">delete (Delete all fields with parameters in a user given list.)</option> + <option value="selname">selname (Select parameters by name)</option> + <option value="delname">delname (Delete parameters by name)</option> + <option value="seltimestep">seltimestep (Select timesteps)</option> + <option value="sellonlatbox">sellonlatbox (Select a latitude/longitude box)</option> + <option value="invertlat">invertlat (Invert latitudes)</option> + <option value="addc">addc (Add a constant)</option> + <option value="subc">subc (Substract a constant)</option> + <option value="mulc">mulc (Multiply with a constant)</option> + <option value="divc">divc (Divide with a constant)</option> + <option value="expr">expr (Evaluate expressions)</option> + <option value="ml2pl">ml2pl (Model to pressure level interpolation)</option> + <option value="ml2hl">ml2hl (Model to height level interpolation)</option> + <option value="intlevel">intlevel (Linear level interpolation)</option> + <option value="sp2gp">sp2gp (Spectral to gridpoint)</option> + <option value="gp2sp">gp2sp (Gridpoint to spectral)</option> + <option value="ens">Ensemble statistics</option> + <option value="zon">Zonal statistics</option> + <option value="tim">Time statistics</option> + <option value="vert">Vertical statistics</option> + <option value="day">Daily statistics</option> + <option value="year">Yearly statistics</option> + <option value="mon">Monthly statistics</option> + <option value="seas">Seasonal statistics</option> + <option value="fld">Statistical values over a field</option> + <option value="add">Add two fields </option> + <option value="sub">Subtract two fields </option> + <option value="mul">Multiply two fields </option> + <option value="div">Divide two fields </option> + <option value="min">Minimum of two fields </option> + <option value="max">Maximum of two fields </option> + <option value="setattribute">Set/modify attributes</option> + </param> + <when value="copy"> + <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> + </when> + <when value="cat"> + <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> + </when> + <when value="replace"> + <param name="add_file" type="data" multiple="true" min="0" max="2" label="Additional input file" format="netcdf"/> + </when> + <when value="duplicate"> + <param name="ndup" type="integer" label="Number of duplicates" value="2"/> + <expand macro="add_cdo_input"/> + </when> + <when value="mergegrid"> + <expand macro="add_cdo_input"/> + </when> + <when value="merge"> + <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> + </when> + <when value="mergetime"> + <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> + </when> + <when value="splitcode"> + <expand macro="add_cdo_input"/> + </when> + <when value="splitparam"> + <expand macro="add_cdo_input"/> + </when> + <when value="splitname"> + <expand macro="add_cdo_input"/> + </when> + <when value="splitlevel"> + <expand macro="add_cdo_input"/> + </when> + <when value="splitgrid"> + <expand macro="add_cdo_input"/> + </when> + <when value="splitzaxis"> + <expand macro="add_cdo_input"/> + </when> + <when value="splittabnum"> + <expand macro="add_cdo_input"/> + </when> + <when value="splithour"> + <expand macro="add_cdo_input"/> + </when> + <when value="splitday"> + <expand macro="add_cdo_input"/> + </when> + <when value="splitseas"> + <expand macro="add_cdo_input"/> + </when> + <when value="splityear"> + <expand macro="add_cdo_input"/> + </when> + <when value="splityearmon"> + <expand macro="add_cdo_input"/> + </when> + <when value="splitmon"> + <expand macro="add_cdo_input"/> + </when> + <when value="splitsel"> + <param name="nset" type="integer" value="0" label="Number of input timesteps for each output file"/> + <param name="noffset" type="integer" optional="true" label="Number of input timesteps skipped before the first timestep range (optional)"/> + <param name="nskip" type="integer" optional="true" label="Number of input timesteps skipped between timestep ranges (optional)"/> + <expand macro="add_cdo_input"/> + </when> + <when value="distgrid"> + <param name="nx" type="integer" value="1" label="Number of regions in x direction, or number of pieces for unstructured grids"/> + <param name="ny" type="integer" label="Number of regions in y direction" value="1"/> + <expand macro="add_cdo_input"/> + </when> + <when value="collgrid"> + <param name="nx" type="integer" label="Number of regions in x direction" optional="true"/> + <param name="names" type="text" label="Comma-separated list of variable names" optional="true"/> + <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> + </when> + <when value="select"> + <param name="params" type="text" value="" label="Parameters for selection"/> + <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> + </when> + <when value="delete"> + <param name="params" type="text" label="Parameters for deletion"/> + <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> + </when> + <when value="selname"> + <param name="params" type="text" value="" label="Parameters for selection"/> + <expand macro="add_cdo_input"/> + </when> + <when value="delname"> + <param name="params" type="text" value="" label="Parameters for selection"/> + <expand macro="add_cdo_input"/> + </when> + <when value="seltimestep"> + <param name="params" type="text" value="" label="Timesteps for selection"/> + <expand macro="add_cdo_input"/> + </when> + <when value="sellonlatbox"> + <param name="params" type="text" value="" label="Parameters for latitude/longitude box in the form of lon1,lon2,lat1,lat2)"/> + <expand macro="add_cdo_input"/> + </when> + <when value="invertlat"> + <expand macro="add_cdo_input"/> + </when> + <when value="addc"> + <param name="const_value" type="float" label="Constant value to add to the fields" value="1"/> + <expand macro="add_cdo_input"/> + </when> + <when value="subc"> + <param name="const_value" type="float" label="Constant value to substract to the fields" value="1"/> + <expand macro="add_cdo_input"/> + </when> + <when value="mulc"> + <param name="const_value" type="float" label="Constant value to scale the fields" value="1"/> + <expand macro="add_cdo_input"/> + </when> + <when value="divc"> + <param name="const_value" type="float" label="Constant value to scale the fields" value="1"/> + <expand macro="add_cdo_input"/> + </when> + <when value="expr"> + <param name="params" type="text" value="" label="Expression for evaluation"/> + <expand macro="add_cdo_input"/> + </when> + <when value="ml2pl"> + <param name="params" type="text" value="" label="Pressure levels (comma separated)"/> + <expand macro="add_cdo_input"/> + </when> + <when value="ml2hl"> + <param name="params" type="text" value="" label="Height levels (comma separated)"/> + <expand macro="add_cdo_input"/> + </when> + <when value="intlevel"> + <param name="params" type="text" value="" label="Levels (comma separated)"/> + <expand macro="add_cdo_input"/> + </when> + <when value="sp2gp"> + <param name="trunc" type="integer" optional="true" value="" label="New spectral resolution"/> + <expand macro="add_cdo_input"/> + </when> + <when value="gp2sp"> + <param name="trunc" type="integer" optional="true" label="New spectral resolution"/> + <expand macro="add_cdo_input"/> + </when> + <when value="ens"> + <expand macro="stat_selection" /> + <expand macro="add_cdo_input"/> + </when> + <when value="zon"> + <expand macro="stat_selection" /> + <expand macro="add_cdo_input"/> + </when> + <when value="tim"> + <expand macro="stat_selection" /> + <expand macro="add_cdo_input"/> + </when> + <when value="vert"> + <expand macro="stat_selection" /> + <expand macro="add_cdo_input"/> + </when> + <when value="day"> + <expand macro="stat_selection" /> + <expand macro="add_cdo_input"/> + </when> + <when value="year"> + <expand macro="stat_selection" /> + <expand macro="add_cdo_input"/> + </when> + <when value="mon"> + <expand macro="stat_selection" /> + <expand macro="add_cdo_input"/> + </when> + <when value="seas"> + <expand macro="stat_selection" /> + <expand macro="add_cdo_input"/> + </when> + <when value="fld"> + <expand macro="stat_selection" /> + <expand macro="add_cdo_input"/> + </when> + <when value="add"> + <expand macro="add_cdo_input"/> + </when> + <when value="sub"> + <expand macro="add_cdo_input"/> + </when> + <when value="mul"> + <expand macro="add_cdo_input"/> + </when> + <when value="div"> + <expand macro="add_cdo_input"/> + </when> + <when value="min"> + <expand macro="add_cdo_input"/> + </when> + <when value="max"> + <expand macro="add_cdo_input"/> + </when> + <when value="setattribute"> + <param name="attr_file" type="data" format="txt" label="Text file containing the list of attributes (one per line)"/> + <expand macro="add_cdo_input"/> + </when> + </conditional> + </xml> +</macros>