Mercurial > repos > climate > cds_essential_variability

annotate essential_climate_variables.xml @ 0:5c0ab9932311 draft

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planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
author climate
date Fri, 03 May 2019 15:11:01 -0400
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children 8b30be2cef81
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5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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1 <tool id="cds_essential_variability" name="Copernicus Essential Climate Variables" version="0.1.4">
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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2 <description>for assessing climate variability</description>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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3 <requirements>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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4 <requirement type="package" version="3">python</requirement>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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5 <requirement type="package" version="0.1.4">cdsapi</requirement>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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6 <requirement type="package" version="1.9.6">cdo</requirement>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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7 </requirements>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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8 <command detect_errors="exit_code"><![CDATA[
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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9 HOME=`pwd` &&
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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10 python3 '$__tool_directory__/ecv_retrieve.py'
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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11 'ecv-for-climate-change' '$variable'
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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12 --year '$year'
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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13 #if str($time_aggregation.selector) == '1_month'
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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14 --month '$time_aggregation.month'
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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15 #else
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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16 --month '01'
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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17 #end if
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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18 --time_aggregation '$time_aggregation.selector'
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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19 --product_type '$product_type'
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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20 --format 'tgz' --output 'tmp.tgz'
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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21 --verbose &&
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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22 tar zxvf tmp.tgz &&
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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23 cat *.grib > tmp.grib &&
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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24 cdo -f nc -t ecmwf copy tmp.grib tmp.nc
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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25 ]]></command>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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26 <inputs>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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27 <param name="variable" type="select" multiple="true" label="Variable(s)">
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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28 <option value="surface_air_temperature" selected="true">Surface air temperature</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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29 <option value="surface_air_relative_humidity" selected="true">Surface air relative humidity</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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30 <option value="0_7cm_volumetric_soil_moisture" selected="true">0-7cm volumetric soil moisture</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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31 <option value="precipitation" selected="true">Precipitation</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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32 <option value="sea_ice" selected="true">Sea-ice</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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33 </param>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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34 <param name="product_type" type="select" label="Select type of data">
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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35 <option value="climatology" selected="true">Climatology</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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36 <option value="anomaly">Anomaly</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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37 </param>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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38 <conditional name="time_aggregation">
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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39 <param name="selector" type="select" label="Time aggregation">
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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40 <option value="12_month" selected="true">yearly</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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41 <option value="1_month">monthly</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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42 </param>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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43 <when value="1_month">
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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44 <param name="month" type="select" multiple="true" label="Select month(s)">
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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45 <option value="01" selected="true">January</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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46 <option value="02" selected="true">February</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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47 <option value="03" selected="true">March</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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48 <option value="04" selected="true">April</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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49 <option value="05" selected="true">May</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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50 <option value="06" selected="true">June</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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51 <option value="07" selected="true">July</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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52 <option value="08" selected="true">August</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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53 <option value="09" selected="true">September</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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54 <option value="10" selected="true">October</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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55 <option value="11" selected="true">November</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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56 <option value="12" selected="true">December</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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57 </param>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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58 </when>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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59 </conditional>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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60
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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61 <param name="year" type="select" multiple="true" label="Select year(s)">
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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62 <option value="1979">1979</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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63 <option value="1980">1980</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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64 <option value="1981">1981</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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65 <option value="1982">1982</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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66 <option value="1983">1983</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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67 <option value="1984">1984</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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68 <option value="1985">1985</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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69 <option value="1986">1986</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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70 <option value="1987">1987</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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71 <option value="1988">1988</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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72 <option value="1989">1989</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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73 <option value="1990">1990</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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74 <option value="1991">1991</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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75 <option value="1992">1992</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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76 <option value="1993">1993</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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77 <option value="1994">1994</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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78 <option value="1995">1995</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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79 <option value="1996">1996</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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80 <option value="1997">1997</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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81 <option value="1998">1998</option>
5c0ab9932311 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
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82 <option value="1999">1999</option>
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83 <option value="2000">2000</option>
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84 <option value="2001">2001</option>
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85 <option value="2002">2002</option>
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86 <option value="2003">2003</option>
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87 <option value="2004">2004</option>
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88 <option value="2005">2005</option>
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89 <option value="2006">2006</option>
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90 <option value="2007">2007</option>
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91 <option value="2008">2008</option>
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92 <option value="2009">2009</option>
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93 <option value="2010">2010</option>
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94 <option value="2011">2011</option>
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95 <option value="2012">2012</option>
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96 <option value="2013">2013</option>
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97 <option value="2014">2014</option>
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98 <option value="2015">2015</option>
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99 <option value="2016">2016</option>
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100 <option value="2017">2017</option>
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101 <option value="2018">2018</option>
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102 <option value="2019" selected="true">2019</option>
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103 </param>
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104 </inputs>
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105 <outputs>
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106 <data name="ofilename" format="netcdf" from_work_dir="tmp.nc"/>
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107 </outputs>
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108 <tests>
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109 <test>
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110 <param name="variable" value="0_7cm_volumetric_soil_moisture"/>
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111 <param name="product_type" value="climatology"/>
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112 <param name="time_aggregation" value="1_month"/>
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113 <param name="month" value="12"/>
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114 <param name="year" value="2018"/>
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115 <output name="ofilename" ftype="netcdf" file="soil_moisture.nc" compare="sim_size" delta="100"/>
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116 </test>
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117 <test>
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118 <param name="variable" value="precipitation,sea_ice"/>
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119 <param name="product_type" value="anomaly"/>
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120 <param name="time_aggregation" value="12_month"/>
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121 <param name="year" value="2017"/>
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122 <output name="ofilename" ftype="netcdf" file="prep_seaice.nc" compare="sim_size" delta="100"/>
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123 </test>
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124 </tests>
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125 <help><![CDATA[
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126
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127 **Copernicus Essential climate variables for assessment of climate variability from 1979 to present**
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128 =======================================================================================================
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129
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130 This tool is a wrapper to retrieve Copernicus Essential Climate Variables.
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131 It corresponds to the European Contribution to the Monitoring of Essential Climate Variables from Space.
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132 An Essential Climate Variable is a physical, chemical or biological variable or a group of linked variables
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133 that critically contributes to the characterization of Earth’ s climate.
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134
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135 The Essential Climate Variables for assessment of climate variability from 1979 to present dataset contains
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136 a selection of climatologies and monthly anomalies of Essential Climate Variables (ECVs) suitable for
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137 monitoring and assessment of climate variability and change. Selection criteria are based on accuracy
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138 and temporal consistency on monthly to decadal time scales. The ECV data products in this set have been
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139 estimated from multiple sources and, depending on the source, may have been adjusted to account for biases
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140 and other known deficiencies. Data sources and adjustment methods used are described in the Product User
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141 Guide, as are various particulars such as the baseline periods used to calculate monthly climatologies and
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142 the corresponding anomalies.
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143
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144
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145 - ECV Factsheets: https://gcos.wmo.int/en/essential-climate-variables/ecv-factsheets
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146 - Copernicus Climate Data Store documentation on Essential Climate Variables:
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147 https://cds.climate.copernicus.eu/cdsapp#!/dataset/ecv-for-climate-change?tab=overview
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148
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149 See climatedata.wmo.int/ for more information on Essential Climate Variables.
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150
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151 .. class:: infomark
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152
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153 It allows to retrieve estimates of Essential Climate Variables (ECVs)
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154 derived from Earth observations.
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155
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156 License:
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157 ~~~~~~~~
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158 Copernicus License V1.1
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159
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160 Generated using Copernicus Climate Change Service information [2019].
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161 Neither the European Commission nor ECMWF is responsible for any use
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162 that may be made of the Copernicus information or data it contains.
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163
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164 ]]></help>
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165 <citations>
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166 </citations>
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167 </tool>