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"planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
author climate
date Tue, 15 Jun 2021 09:39:23 +0000
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7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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1 #!/usr/bin/env bash
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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3 GALAXY_SLOTS=$1
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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5 echo "===================================================================="
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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6 echo " Create Config machine for CESM "
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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7 echo " Tool will be running with $GALAXY_SLOTS processors (MPI tasks) "
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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8 echo "===================================================================="
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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11 cat > config_machines_galaxy.xml << EOF
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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12 <?xml version="1.0"?>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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13 <config_machines>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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14 <machine MACH="galaxy">
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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15 <DESC>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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16 VM
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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17 x4 CPUs
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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18 Gold Centos 7
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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19 </DESC>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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20 <NODENAME_REGEX>UNSET</NODENAME_REGEX>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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21 <OS>LINUX</OS>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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22 <PROXY>UNSET</PROXY>
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23 <COMPILERS>gnu</COMPILERS>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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24 <MPILIBS>mpich</MPILIBS>
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25 <SAVE_TIMING_DIR>UNSET</SAVE_TIMING_DIR>
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26 <CIME_OUTPUT_ROOT>\$ENV{HOME}/work</CIME_OUTPUT_ROOT>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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27 <DIN_LOC_ROOT>\$ENV{HOME}/inputdata</DIN_LOC_ROOT>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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28 <DIN_LOC_ROOT_CLMFORC>\$ENV{HOME}/inputdata/atm/datm7</DIN_LOC_ROOT_CLMFORC>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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29 <DOUT_S_ROOT>\$ENV{HOME}/archive/\$CASE</DOUT_S_ROOT>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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30 <BASELINE_ROOT>UNSET</BASELINE_ROOT>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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31 <CCSM_CPRNC>UNSET</CCSM_CPRNC>
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32 <GMAKE>make</GMAKE>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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33 <GMAKE_J>$GALAXY_SLOTS</GMAKE_J>
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34 <BATCH_SYSTEM>none</BATCH_SYSTEM>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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35 <SUPPORTED_BY>nobody</SUPPORTED_BY>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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36 <MAX_TASKS_PER_NODE>$GALAXY_SLOTS</MAX_TASKS_PER_NODE>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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37 <MAX_MPITASKS_PER_NODE>$GALAXY_SLOTS</MAX_MPITASKS_PER_NODE>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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38 <PROJECT_REQUIRED>FALSE</PROJECT_REQUIRED>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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39 <mpirun mpilib="default">
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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40 <executable>mpiexec</executable>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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41 <arguments>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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42 <arg name="anum_tasks"> -np \$TOTALPES</arg>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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43 </arguments>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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44 </mpirun>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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45 <module_system type="none"/>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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46 <environment_variables>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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47 <env name="KMP_STACKSIZE">64M</env>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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48 </environment_variables>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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49 <resource_limits>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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50 <resource name="RLIMIT_STACK">-1</resource>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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51 </resource_limits>
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52 </machine>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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53 </config_machines>
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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54 EOF
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55
7a7ba86e95a4 "planemo upload for repository https://github.com/ESCOMP/CESM commit 5c969e494841237de0b2301520d9321672cc9f5b"
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56 echo "Configuration machine created."