Mercurial > repos > climate > climate_stripes
annotate climate-stripes.xml @ 1:c6f2435d680b draft
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit 78edbd356193b8a8701ff7a28b7979c7047c0c5b"
| author | climate |
|---|---|
| date | Tue, 14 Apr 2020 15:08:10 -0400 |
| parents | fec3147b0206 |
| children | abdc27e01dca |
| rev | line source |
|---|---|
|
1
c6f2435d680b
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit 78edbd356193b8a8701ff7a28b7979c7047c0c5b"
climate
parents:
0
diff
changeset
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1 <tool id="climate_stripes" name="climate stripes" version="1.0.1"> |
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0
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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2 <description>from timeseries</description> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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3 <requirements> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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4 <requirement type="package" version="3">python</requirement> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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changeset
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5 <requirement type="package" version="3.1.1">matplotlib</requirement> |
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1
c6f2435d680b
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit 78edbd356193b8a8701ff7a28b7979c7047c0c5b"
climate
parents:
0
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6 <requirement type="package" version="1.0.0">pandas</requirement> |
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0
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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7 </requirements> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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8 <command detect_errors="exit_code"><![CDATA[ |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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9 python3 '$__tool_directory__/climate_stripes.py' |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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10 '$ifilename' '$variable' |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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11 --cmap '$adv.colormap' |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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12 #if str($title).strip() |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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changeset
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13 --title '$title' |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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14 #end if |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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15 #if str($adv.xname).strip() |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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16 --xname '$adv.xname' |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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17 #end if |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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18 #if str($adv.format_date).strip() |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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19 --format_date '$adv.format_date' |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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changeset
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20 #end if |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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21 #if str($adv.format_plot).strip() |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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22 --format_plot '$adv.format_plot' |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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changeset
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23 #end if |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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changeset
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24 --output image.png |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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25 ]]></command> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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changeset
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26 <inputs> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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27 <param name="ifilename" type="data" format="tabular" label="timeseries to plot"></param> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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28 <param name="variable" type="text" value="global" label="column name to use for plotting" /> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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29 <param name="title" type="text" value="" label="plot title" /> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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changeset
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30 <section name="adv" title="Advanced Options" expanded="false"> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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31 <param name="xname" type="text" value="" label="column name to use for x-axis" /> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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32 <param name="format_date" type="text" value="" label="format for input date/time column" /> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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33 <param name="format_plot" type="text" value="" label="format for plotting dates on the x-axis" /> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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34 <param name="colormap" type="select"> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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35 <option value="Accent">Accent</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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36 <option value="Blues">Blues</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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37 <option value="BrBG">BrBG</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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38 <option value="BuGn">BuGn</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
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39 <option value="BuPu">BuPu</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
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40 <option value="CMRmap">CMRmap</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
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41 <option value="Dark2">Dark2</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
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42 <option value="GnBu">GnBu</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
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43 <option value="Greens">Greens</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
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44 <option value="Greys">Greys</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
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45 <option value="OrRd">OrRd</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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46 <option value="Oranges">Oranges</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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47 <option value="PRGn">PRGn</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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48 <option value="Paired">Paired</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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49 <option value="Pastel1">Pastel1</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
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50 <option value="Pastel2">Pastel2</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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51 <option value="PiYG">PiYG</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
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52 <option value="PuBu">PuBu</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
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53 <option value="PuBuGn">PuBuGn</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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54 <option value="PuOr">PuOr</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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55 <option value="PuRd">PuRd</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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56 <option value="Purples">Purples</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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57 <option value="RdBu">RdBu</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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58 <option value="RdGy">RdGy</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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59 <option value="RdPu">RdPu</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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60 <option value="RdBu_r" selected="true">RdBu_r</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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61 <option value="RdGy_r">RdGy_r</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
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62 <option value="RdPu_r">RdPu_r</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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63 <option value="RdYlBu">RdYlBu</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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64 <option value="RdYlGn">RdYlGn</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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65 <option value="Reds">Reds</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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66 <option value="Set1">Set1</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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67 <option value="Set2">Set2</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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68 <option value="Set3">Set3</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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69 <option value="Spectral">Spectral</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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70 <option value="Wistia">Wistia</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
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71 <option value="YlGn">YlGn</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
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72 <option value="YlGnBu">YlGnBu</option> |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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73 <option value="YlOrBr">YlOrBr</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
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74 <option value="YlOrRd">YlOrRd</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
75 <option value="afmhot">afmhot</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
76 <option value="autumn">autumn</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
77 <option value="binary">binary</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
78 <option value="bone">bone</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
79 <option value="brg">brg</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
80 <option value="bwr">bwr</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
81 <option value="cool">cool</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
82 <option value="coolwarm">coolwarm</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
83 <option value="copper">copper</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
84 <option value="cubehelix">cubehelix</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
85 <option value="flag">flag</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
86 <option value="gist_earth">gist_earth</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
87 <option value="gist_gray">gist_gray</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
88 <option value="gist_heat">gist_heat</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
89 <option value="gist_ncar">gist_ncar</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
90 <option value="gist_rainbow">gist_rainbow</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
91 <option value="gist_stern">gist_stern</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
92 <option value="gist_yarg">gist_yarg</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
93 <option value="gnuplot">gnuplot</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
94 <option value="gnuplot2">gnuplot2</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
95 <option value="gray">gray</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
96 <option value="hot">hot</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
97 <option value="hsv">hsv</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
98 <option value="jet">jet</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
99 <option value="nipy_spectral">nipy_spectral</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
100 <option value="ocean">ocean</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
101 <option value="pink">pink</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
102 <option value="prism">prism</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
103 <option value="rainbow">rainbow</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
104 <option value="seismic">seismic</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
105 <option value="spring">spring</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
106 <option value="summer">summer</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
107 <option value="tab10">tab10</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
108 <option value="tab20">tab20</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
109 <option value="tab20b">tab20b</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
110 <option value="tab20c">tab20c</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
111 <option value="terrain">terrain</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
112 <option value="winter">winter</option> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
113 </param> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
114 </section> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
115 </inputs> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
116 <outputs> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
117 <data name="ofilename" format="png" from_work_dir="image.png"/> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
118 </outputs> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
119 <tests> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
120 <test> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
121 <param name="ifilename" value="T2Mclimatology.txt" /> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
122 <param name="variable" value="global" /> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
123 <output name="ofilename" ftype="png" file="T2Mstripes.png" compare="sim_size" delta="50"/> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
124 </test> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
125 <test> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
126 <param name="ifilename" value="T2Mclimatology.txt" /> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
127 <param name="variable" value="global" /> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
128 <param name="title" value="Surface Temperature stripes (1979-2019)" /> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
129 <param name="colormap" value="OrRd" /> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
130 <param name="xname" value="Month" /> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
131 <param name="format_date" value="XYXm" /> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
132 <param name="format_plot" value="XY" /> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
133 <output name="ofilename" ftype="png" file="T2Mstripes_with_axis.png" compare="sim_size" delta="50"/> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
134 </test> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
135 </tests> |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
136 <help><![CDATA[ |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
137 |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
138 **Climate stripes** |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
139 ========================================= |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
140 |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
141 This tool generate stripes from timeseries and is often used to generate warming stripes. |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
142 |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
143 |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
144 .. class:: infomark |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
145 |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
146 The wrappers aims at creating stripes from a timeseries. |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
147 The input file must be in tabular format and must contain at least one column that is used |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
148 for creating stripes. By default, no title and no axis are plotted. An additional column |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
149 can be specified for date/time and its date and time format must then be specified |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
150 with an additional options. |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
changeset
|
151 |
|
fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
climate
parents:
diff
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152 **What it does** |
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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
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153 ---------------- |
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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
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154 |
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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
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155 This tools creates an image (png format) corresponding to the visualization of a timeseries as |
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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
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156 stripes (see https://www.climate-lab-book.ac.uk/2018/warming-stripes/). |
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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
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157 By default, the colormap is ``RdBu_r`` and no axis nor title are plotted. These settings can be |
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fec3147b0206
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
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158 changed in *Advanced settings*. |
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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
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159 ]]></help> |
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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
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160 <citations> |
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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
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161 </citations> |
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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
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162 </tool> |