Mercurial > repos > climate > ctsm_fates

annotate ctsm-fates.xml.SLEEP @ 0:8c7414c07367 draft

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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
author climate
date Wed, 21 Oct 2020 20:30:35 +0000
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8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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1 <tool id="ctsm-fates" name="CTSM/FATES-EMERALD" version="2.0.1">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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2 <description>Functionally Assembled Terrestrial Ecosystem Simulator</description>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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3 <requirements>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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4 <requirement type="package" version="2.0.1">fates-emerald</requirement>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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5 <requirement type="package" version="1.32">tar</requirement>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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6 <requirement type="package" version="2.35">binutils</requirement>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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7 <requirement type="package" version="3">python</requirement>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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8 <requirement type="package" version="2.0132">perl-xml-libxml</requirement>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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9 </requirements>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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10 <command detect_errors="exit_code"><![CDATA[
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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11 ( export HOME=`pwd` &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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12 export USER='jovyan' &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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13 mkdir -p .cime &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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14 cp '$__tool_directory__/config' .cime/config &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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15 cp '$__tool_directory__/config_compilers.xml' '.cime/config_compilers.xml' &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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16 cp '$__tool_directory__/config_machines.xml' '.cime/config_machines.xml' &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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17 mkdir inputdata &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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18 tar -xf '$inputdata' -C 'inputdata/' &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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19 mkdir output_dir &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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20 mkdir usermods_dirs &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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21 #if str($adv.condi_user_mods).strip() == 'yes'
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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22 # should create a new type user_mods.tar
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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23 cd usermods_dirs &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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24 tar xf '$user_mods' &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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25 cd .. &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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26 #end if
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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27 create_newcase --case '$casename' --compset 2000_DATM%1PTGSWP3_CLM50%FATES_SICE_SOCN_MOSART_SGLC_SWAV --machine espresso --run-unsupported
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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28 #if str($adv.condi_user_mods).strip() == 'yes'
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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29 --user-mods-dir usermods_dirs
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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30 #end if
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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31 --res '$resolution' &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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32 cd '$casename' &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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33 ./case.setup > $case_info 2>&1 &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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34 #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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35 ./xmlchange RUN_TYPE=$adv_period.condi_type_run.run_type &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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36 ./xmlchange RUN_REFDATE=$adv_period.condi_type_run.run_refdate &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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37 ./xmlchange RUN_REFCASE=$adv_period.condi_type_run.run_refcase &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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38 #end if
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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39 #if ((str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'startup') and ($adv_period.condi_type_run.run_startdate != ''))
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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40 ./xmlchange RUN_STARTDATE=$adv_period.condi_type_run.run_startdate &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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41 #end if
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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42 ./xmlchange STOP_N=$adv_period.stopn &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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43 ./xmlchange STOP_OPTION=$adv_period.stop_option &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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44 ./xmlchange CCSM_CO2_PPMV=$adv.co2 &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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45 ./xmlchange DOUT_S=FALSE &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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46 cp '$user_nl_clm_customization' user_nl_clm &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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47 ./case.build >> $case_info 2>&1 &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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48 #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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49 tar -xf '$adv_period.condi_type_run.restart' -C '../work/$casename/run/' &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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50
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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51 #end if
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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52 ./case.submit >> $case_info 2>&1 &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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53 mkdir -p restart &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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54 (cat '../work/$casename/run/rpointer'.* > $rinfo || printf "No restarts\n") &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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55 (cp '../work/$casename/run/$casename'.*.r*.*.nc restart/ || printf "No netCDF restarts\n") &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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56 (cp '../work/$casename/run/$casename'.*.r*.*.bin restart/ || printf "No bin restarts\n") &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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57 (cp '../work/$casename/run/rpointer'.* restart/ || printf "no rpointer\n") &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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58 cd restart &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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59 tar cvf $restart . &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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60 cd .. &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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61 (cp '../work/$casename/run/$casename'.*.h*.*.nc ../output_dir/ || printf "no netCDF outputs\n") &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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62 (gunzip '../work/$casename/run/'*.log.* || printf "no compressed logs") &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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63 cat '../work/$casename/run/'atm.log.* >> $atm_log &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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64 cat '../work/$casename/run/'cesm.log.* >> $cesm_log &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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65 cat '../work/$casename/run/'cpl.log.* >> $cpl_log &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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66 cat '../work/$casename/run/'lnd.log.* >> $lnd_log &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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67 cat '../work/$casename/run/'rof.log.* >> $rof_log &&
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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68 sleep 1000 ) ||
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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69 (printf "Case failed" && tar cf $work \${HOME}/work)
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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70 ]]></command>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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71 <configfiles>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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72 <configfile name="user_nl_clm_customization"><![CDATA[
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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73 &clm_inparm
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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74 hist_mfilt = 120,
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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75 use_fates = .true.,
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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76 fates_spitfire_mode = $adv_clm.fates_spitfire_mode,
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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77 use_fates_planthydro = $adv_clm.use_fates_planthydro,
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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78 use_fates_cohort_age_tracking = $adv_clm.use_fates_cohort_age_tracking,
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
79 use_fates_ed_st3 = $adv_clm.use_fates_ed_st3,
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
80 use_fates_ed_prescribed_phys = $adv_clm.use_fates_ed_prescribed_phys,
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
81 use_fates_logging = $adv_clm.use_fates_logging,
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
82 use_fates_fixed_biogeog = $adv_clm.use_fates_fixed_biogeog,
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
83 #if (str($adv_clm.fates_parteh_mode).strip() != '')
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
84 fates_parteh_mode = $adv_clm.fates_parteh_mode
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
85 #end if
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
86 /
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
87 ]]>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
88 </configfile>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
89 </configfiles>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
90 <inputs>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
91 <param name="inputdata" type="data" format='tar' label="inputdata for running FATES EMERALD"></param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
92 <param name="casename" type="text" value="usecase" label="Name of your case">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
93 <validator type="regex" message="start with a letter and no blanks">^[A-Za-z][A-Za-z0-9]*</validator>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
94 </param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
95 <param name="resolution" type="select" label="Model resolution">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
96 <option value="1x1_ALP1">ALP1</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
97 <option value="1x1_ALP2">ALP2</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
98 <option value="1x1_ALP3">ALP3</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
99 <option value="1x1_ALP4">ALP4</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
100 <option value="1x1_SUB1">SUB1</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
101 <option value="1x1_SUB2">SUB2</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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102 <option value="1x1_SUB3">SUB3</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
103 <option value="1x1_SUB4">SUB4</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
104 <option value="1x1_BOR1">BOR1</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
105 <option value="1x1_BOR2">BOR2</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
106 <option value="1x1_BOR3">BOR3</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
107 <option value="1x1_BOR4">BOR4</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
108 <option value="1x1_LYG">LYG</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
109 <option value="1x1_BUO">BUO</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
110 <option value="1x1_HAV">HAV</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
111 <option value="1x1_SKO">SKO</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
112 <option value="1x1_VIKE">VIKE</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
113 <option value="1x1_LIAH">LIAH</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
114 <option value="1x1_FINN">FINN</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
115 </param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
116 <section name="adv_period" title="Customize the model run period" expanded="false">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
117
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
118 <conditional name="condi_type_run">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
119 <param name="run_type" type="select" label="Determines the model run initialization type.">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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120 <option value="startup" selected="true">startup</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
121 <option value="hybrid">hybrid</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
122 <option value="branch">branch</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
123 </param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
124 <when value="startup">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
125 <param name="run_startdate" type="text" value="" label="Run start date (yyyy-mm-dd). Only used for startup or hybrid runs.">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
126 <validator type="regex" message="YYYY-MM-DD">(^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))</validator>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
127 </param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
128 </when>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
129 <when value="branch">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
130 <param name="run_refcase" type="text" value="" label="Reference case for hybrid or branch runs"></param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
131 <param name="run_refdate" type="text" value="" label="Reference date for hybrid or branch runs (yyyy-mm-dd)">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
132 <validator type="regex" message="YYYY-MM-DD">(^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))</validator>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
133 </param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
134 <param name="restart" type="data" format='tar' label="restart for running FATES EMERALD"></param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
135 </when>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
136 <when value="hybrid">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
137 <param name="run_refcase" type="text" value="" label="Reference case for hybrid or branch runs"></param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
138 <param name="run_refdate" type="text" value="" label="Reference date for hybrid or branch runs (yyyy-mm-dd)">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
139 <validator type="regex" message="YYYY-MM-DD">(^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))</validator>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
140 </param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
141 <param name="run_startdate" type="text" value="" label="Run start date (yyyy-mm-dd). Only used for startup or hybrid runs.">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
142 <validator type="regex" message="YYYY-MM-DD">(^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))</validator>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
143 </param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
144 <param name="restart" type="data" format='tar' label="restart for running FATES EMERALD"></param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
145 </when>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
146 </conditional>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
147 <param name="stopn" type="integer" value="5" label="Provides a numerical count for STOP_OPTION."></param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
148 <param name="stop_option" type="select" label=" Sets the run length along with STOP_N and STOP_DATE">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
149 <option value="ndays" selected="true">ndays</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
150 <option value="none">none</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
151 <option value="never">never</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
152 <option value="nsteps">nsteps</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
153 <option value="nseconds">nseconds</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
154 <option value="nminutes">nminutes</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
155 <option value="nhours">nhours</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
156 <option value="nday">ndays</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
157 <option value="nmonths">nmonths</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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158 <option value="nyears">nyears</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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159 <option value="date">date</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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160 <option value="ifdays0">ifday0</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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161 <option value="end">end</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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162 </param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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163 </section>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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164 <section name="adv_clm" title="CLM namelist customization" expanded="false">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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165 <param name="use_fates_planthydro" type="boolean" label="Toggle to turn on plant hydraulics" truevalue=".true." falsevalue=".false." checked="false"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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166 <param name="use_fates_cohort_age_tracking" type="boolean" label="Toggle to turn on cohort age tracking" truevalue=".true." falsevalue=".false." checked="false"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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167 <param name="use_fates_ed_st3" type="boolean" label="Toggle to turn on Static Stand Structure Mode" truevalue=".true." falsevalue=".false." checked="false"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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168 <param name="use_fates_ed_prescribed_phys" type="boolean" label="Toggle to turn on prescribed physiology" truevalue=".true." falsevalue=".false." checked="false"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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169 <param name="use_fates_logging" type="boolean" label="Toggle to turn on the logging module" truevalue=".true." falsevalue=".false." checked="false"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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170 <param name="use_fates_fixed_biogeog" type="boolean" label="Toggle to turn on fixed biogeography mode" truevalue=".true." falsevalue=".false." checked="false"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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171 <param name="fates_spitfire_mode" type="select" label="Spitfire module to simulate fire">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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172 <option value="0" selected="true">None</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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173 <option value="1">Use a global constant lightning rate found in fates_params</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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174 <option value="2">Use an external lightning dataset</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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175 <option value="3">Use an external confirmed ignitions dataset</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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176 <option value="4">Use external lightning and population datasets to simulate both natural and anthropogenic ignitions</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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177 </param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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178 <param name="fates_parteh_mode" type="select" label="Switch deciding which nutrient model to use in FATES">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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179 <option value="" selected="true">None</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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180 <option value="1">1</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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181 <option value="2">2</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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182 </param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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183 </section>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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184 <section name="adv" title="Advanced customization" expanded="false">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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185 <param name="co2" type="float" value="367.0" label="Atmospheric CO2 molar ratio (by volume) only used when co2_type==constant (umol/mol)"></param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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186 <conditional name="condi_user_mods">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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187 <param name="add_changes" type="select" label="user-modified source code">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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188 <option value="no" selected="true">no</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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189 <option value="yes">yes</option>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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190 </param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
191 <when value="yes">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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192 <param name="usermods" type="data" format="tar" label="SourceMods"></param>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
193 </when>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
194 <when value="no"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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195 </conditional>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
196 </section>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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197 </inputs>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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198 <outputs>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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199 <collection name="history_files" type="list" label="${tool.name} on ${inputdata.name} (history file)">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
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200 <discover_datasets pattern="__designation_and_ext__" directory="output_dir" visible="true" format="netcdf"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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diff changeset
201 </collection>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
202 <data name="atm_log" format="txt" label="${tool.name} on ${inputdata.name} (atm.log)"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
203 <data name="cesm_log" format="txt" label="${tool.name} on ${inputdata.name} (cesm.log)"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
204 <data name="cpl_log" format="txt" label="${tool.name} on ${inputdata.name} (cpl.log)"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
205 <data name="lnd_log" format="txt" label="${tool.name} on ${inputdata.name} (lnd.log)"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
206 <data name="rof_log" format="txt" label="${tool.name} on ${inputdata.name} (rof.log)"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
207 <data name="restart" format="tar" label="${tool.name} on ${inputdata.name} (restart)"></data>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
208 <data name="case_info" format="txt" label="${tool.name} on ${inputdata.name} (case info)"></data>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
209 <data name="rinfo" format="txt" label="${tool.name} on ${inputdata.name} (restart info)"></data>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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210 <data name="work" format="tar" label="${tool.name} on ${inputdata.name} (workdir)">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
211 </data>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
212 </outputs>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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diff changeset
213 <tests>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
214 <test>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
215 <param name="inputdata" value="inputdata_test.tar" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
216 <param name="casename" value="test" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
217 <param name="resolution" value="1x1_ALP1" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
218 <param name="run_startdate" value="2000-01-01" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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219 <param name="stop_option" value="nsteps" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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diff changeset
220 <param name="stopn" value="1" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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diff changeset
221 <output name="atm_log" ftype="txt" file="atm.log">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
222 <assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
223 <has_text text="(datm_comp_final) atm: end of main integration loop" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
224 </assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
225 </output>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
226 <output name="cesm_log" ftype="txt" file="cesm.log">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
227 <assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
228 <has_text text="pes participating in computation for CLM" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
229 </assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
230 </output>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
231 <output name="cpl_log" ftype="txt" file="cpl.log">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
232 <assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
233 <has_text text="SUCCESSFUL TERMINATION" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
234 </assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
235 </output>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
236 <output name="lnd_log" ftype="txt" file="lnd.log">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
237 <assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
238 <has_text text="Successfully" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
239 </assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
240 </output>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
241 <output name="rof_log" ftype="txt" file="rof.log">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
242 <assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
243 <has_text text="MOSART model initialization" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
244 </assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
245 </output>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
246 <output name="case_info" ftype="txt" file="case_info.txt">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
247 <assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
248 <has_text text="MODEL BUILD HAS FINISHED SUCCESSFULLY" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
249 <has_line_matching expression="Submitted job" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
250 </assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
251 </output>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
252 <output name="work" ftype="tar" file="workdir.tar">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
253 <assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
254 <has_size value="0"/>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
255 </assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
256 </output>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
257 <output name="restart" ftype="tar" file="restart.tar" compare="sim_size" delta="100" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
258 <output name="rinfo" ftype="txt" file="restart_info.txt">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
259 <assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
260 <has_line_matching expression="*datm.r.2000-01-01-01800.nc*" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
261 <has_line_matching expression="*datm.rs1.2000-01-01-01800.bin*" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
262 <has_line_matching expression="*cpl.r.2000-01-01-01800.nc*" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
263 <has_line_matching expression="*clm2.r.2000-01-01-01800.nc*" />
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
264 </assert_contents>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
265 </output>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
266 <output_collection name="history_files" count="0">
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
267 </output_collection>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
268 </test>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
269 </tests>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
270 <help><![CDATA[
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
271
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
272 **The Functionally Assembled Terrestrial Ecosystem Simulator (FATES)**
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
273 ==========================================================================
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
274
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
275 This tool create and run CTSM-FATES EMERALD experiments from fates-emerald release.
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
276
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
277 This version of FATES is maintained by the University of Oslo.
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
278
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
279 Currently available resolution are as following:
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
280
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
281 SeedClim Sites:
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
282 ~~~~~~~~~~~~~~~
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
283
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
284 - ALP1,61.0243N,8.12343E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
285 - ALP2,60.8231N,7.27596E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
286 - ALP3,60.8328N,7.17561E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
287 - ALP4,60.9335N,6.41504E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
288 - SUB1,60.8203N,8.70466E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
289 - SUB2,60.8760N,7.17666E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
290 - SUB3,61.0866N,6.63028E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
291 - SUB4,60.5445N,6.51468E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
292 - BOR1,61.0355N,9.07876E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
293 - BOR2,60.8803N,7.16982E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
294 - BOR3,60.6652N,6.33738E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
295 - BOR4,60.6901N,5.96487E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
296
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
297 LandPress Sites:
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
298 ~~~~~~~~~~~~~~~~
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
299
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
300 - LYG,60.70084N,5.092566E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
301 - BUO,65.83677N,12.224506E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
302 - HAV,64.779N,11.2193E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
303 - SKO,65.79602N,12.219299E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
304
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
305 Three-D Sites:
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
306 ~~~~~~~~~~~~~~
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
307
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
308 - VIKE,60.88019N,7.16990E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
309 - JOAS,60.86183N,7.16800E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
310 - LIAH,60.85994N,7.19504E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
311
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
312
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
313 Finnmark Site:
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
314 ~~~~~~~~~~~~~~
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
315
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
316 - FINN,69.341088N,25.293524E
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
317
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
318 ]]></help>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
319 <citations>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
320
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
321 </citations>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
322 <edam_topics>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
323 <edam_topic>topic_3855</edam_topic>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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324 <edam_topic>topic_3318</edam_topic>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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325 <edam_topic>topic_3050</edam_topic>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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326 <edam_topic>topic_0610</edam_topic>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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327 </edam_topics>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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328 <edam_operations>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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329 <edam_operation>operation_3946</edam_operation>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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330 <edam_operation>operation_2426</edam_operation>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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331 </edam_operations>
8c7414c07367 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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332 </tool>