diff test-data/cesm.log @ 0:8c7414c07367 draft

"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
author climate
date Wed, 21 Oct 2020 20:30:35 +0000 (2020-10-21)
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cesm.log	Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,233 @@
+nohup: ignoring input
+ PIO rearranger options:
+   comm type     =p2p                                                                             
+   comm fcd      =2denable                                                                        
+   max pend req (comp2io)  =           0
+   enable_hs (comp2io)     = T
+   enable_isend (comp2io)  = F
+   max pend req (io2comp)  =           0
+   enable_hs (io2comp)    = F
+   enable_isend (io2comp)  = T
+(seq_comm_setcomm)  init ID (  1 GLOBAL          ) pelist   =     0     0     1 ( npes =     1) ( nthreads =  1)( suffix =)
+(seq_comm_setcomm)  init ID (  2 CPL             ) pelist   =     0     0     1 ( npes =     1) ( nthreads =  1)( suffix =)
+(seq_comm_setcomm)  init ID (  5 ATM             ) pelist   =     0     0     1 ( npes =     1) ( nthreads =  1)( suffix =)
+(seq_comm_joincomm) init ID (  6 CPLATM          ) join IDs =     2     5       ( npes =     1) ( nthreads =  1)
+(seq_comm_jcommarr) init ID (  3 ALLATMID        ) join multiple comp IDs       ( npes =     1) ( nthreads =  1)
+(seq_comm_joincomm) init ID (  4 CPLALLATMID     ) join IDs =     2     3       ( npes =     1) ( nthreads =  1)
+(seq_comm_setcomm)  init ID (  9 LND             ) pelist   =     0     0     1 ( npes =     1) ( nthreads =  1)( suffix =)
+(seq_comm_joincomm) init ID ( 10 CPLLND          ) join IDs =     2     9       ( npes =     1) ( nthreads =  1)
+(seq_comm_jcommarr) init ID (  7 ALLLNDID        ) join multiple comp IDs       ( npes =     1) ( nthreads =  1)
+(seq_comm_joincomm) init ID (  8 CPLALLLNDID     ) join IDs =     2     7       ( npes =     1) ( nthreads =  1)
+(seq_comm_setcomm)  init ID ( 13 ICE             ) pelist   =     0     0     1 ( npes =     1) ( nthreads =  1)( suffix =)
+(seq_comm_joincomm) init ID ( 14 CPLICE          ) join IDs =     2    13       ( npes =     1) ( nthreads =  1)
+(seq_comm_jcommarr) init ID ( 11 ALLICEID        ) join multiple comp IDs       ( npes =     1) ( nthreads =  1)
+(seq_comm_joincomm) init ID ( 12 CPLALLICEID     ) join IDs =     2    11       ( npes =     1) ( nthreads =  1)
+(seq_comm_setcomm)  init ID ( 17 OCN             ) pelist   =     0     0     1 ( npes =     1) ( nthreads =  1)( suffix =)
+(seq_comm_joincomm) init ID ( 18 CPLOCN          ) join IDs =     2    17       ( npes =     1) ( nthreads =  1)
+(seq_comm_jcommarr) init ID ( 15 ALLOCNID        ) join multiple comp IDs       ( npes =     1) ( nthreads =  1)
+(seq_comm_joincomm) init ID ( 16 CPLALLOCNID     ) join IDs =     2    15       ( npes =     1) ( nthreads =  1)
+(seq_comm_setcomm)  init ID ( 21 ROF             ) pelist   =     0     0     1 ( npes =     1) ( nthreads =  1)( suffix =)
+(seq_comm_joincomm) init ID ( 22 CPLROF          ) join IDs =     2    21       ( npes =     1) ( nthreads =  1)
+(seq_comm_jcommarr) init ID ( 19 ALLROFID        ) join multiple comp IDs       ( npes =     1) ( nthreads =  1)
+(seq_comm_joincomm) init ID ( 20 CPLALLROFID     ) join IDs =     2    19       ( npes =     1) ( nthreads =  1)
+(seq_comm_setcomm)  init ID ( 25 GLC             ) pelist   =     0     0     1 ( npes =     1) ( nthreads =  1)( suffix =)
+(seq_comm_joincomm) init ID ( 26 CPLGLC          ) join IDs =     2    25       ( npes =     1) ( nthreads =  1)
+(seq_comm_jcommarr) init ID ( 23 ALLGLCID        ) join multiple comp IDs       ( npes =     1) ( nthreads =  1)
+(seq_comm_joincomm) init ID ( 24 CPLALLGLCID     ) join IDs =     2    23       ( npes =     1) ( nthreads =  1)
+(seq_comm_setcomm)  init ID ( 29 WAV             ) pelist   =     0     0     1 ( npes =     1) ( nthreads =  1)( suffix =)
+(seq_comm_joincomm) init ID ( 30 CPLWAV          ) join IDs =     2    29       ( npes =     1) ( nthreads =  1)
+(seq_comm_jcommarr) init ID ( 27 ALLWAVID        ) join multiple comp IDs       ( npes =     1) ( nthreads =  1)
+(seq_comm_joincomm) init ID ( 28 CPLALLWAVID     ) join IDs =     2    27       ( npes =     1) ( nthreads =  1)
+(seq_comm_setcomm)  init ID ( 33 ESP             ) pelist   =     0     0     1 ( npes =     1) ( nthreads =  1)( suffix =)
+(seq_comm_joincomm) init ID ( 34 CPLESP          ) join IDs =     2    33       ( npes =     1) ( nthreads =  1)
+(seq_comm_jcommarr) init ID ( 31 ALLESPID        ) join multiple comp IDs       ( npes =     1) ( nthreads =  1)
+(seq_comm_joincomm) init ID ( 32 CPLALLESPID     ) join IDs =     2    31       ( npes =     1) ( nthreads =  1)
+(seq_comm_setcomm)  init ID ( 37 IAC             ) pelist   =     0     0     1 ( npes =     1) ( nthreads =  1)( suffix =)
+(seq_comm_joincomm) init ID ( 38 CPLIAC          ) join IDs =     2    37       ( npes =     1) ( nthreads =  1)
+(seq_comm_jcommarr) init ID ( 35 ALLIACID        ) join multiple comp IDs       ( npes =     1) ( nthreads =  1)
+(seq_comm_joincomm) init ID ( 36 CPLALLIACID     ) join IDs =     2    35       ( npes =     1) ( nthreads =  1)
+(seq_comm_printcomms)     1     0     1     1  GLOBAL:
+(seq_comm_printcomms)     2     0     1     1  CPL:
+(seq_comm_printcomms)     3     0     1     1  ALLATMID:
+(seq_comm_printcomms)     4     0     1     1  CPLALLATMID:
+(seq_comm_printcomms)     5     0     1     1  ATM:
+(seq_comm_printcomms)     6     0     1     1  CPLATM:
+(seq_comm_printcomms)     7     0     1     1  ALLLNDID:
+(seq_comm_printcomms)     8     0     1     1  CPLALLLNDID:
+(seq_comm_printcomms)     9     0     1     1  LND:
+(seq_comm_printcomms)    10     0     1     1  CPLLND:
+(seq_comm_printcomms)    11     0     1     1  ALLICEID:
+(seq_comm_printcomms)    12     0     1     1  CPLALLICEID:
+(seq_comm_printcomms)    13     0     1     1  ICE:
+(seq_comm_printcomms)    14     0     1     1  CPLICE:
+(seq_comm_printcomms)    15     0     1     1  ALLOCNID:
+(seq_comm_printcomms)    16     0     1     1  CPLALLOCNID:
+(seq_comm_printcomms)    17     0     1     1  OCN:
+(seq_comm_printcomms)    18     0     1     1  CPLOCN:
+(seq_comm_printcomms)    19     0     1     1  ALLROFID:
+(seq_comm_printcomms)    20     0     1     1  CPLALLROFID:
+(seq_comm_printcomms)    21     0     1     1  ROF:
+(seq_comm_printcomms)    22     0     1     1  CPLROF:
+(seq_comm_printcomms)    23     0     1     1  ALLGLCID:
+(seq_comm_printcomms)    24     0     1     1  CPLALLGLCID:
+(seq_comm_printcomms)    25     0     1     1  GLC:
+(seq_comm_printcomms)    26     0     1     1  CPLGLC:
+(seq_comm_printcomms)    27     0     1     1  ALLWAVID:
+(seq_comm_printcomms)    28     0     1     1  CPLALLWAVID:
+(seq_comm_printcomms)    29     0     1     1  WAV:
+(seq_comm_printcomms)    30     0     1     1  CPLWAV:
+(seq_comm_printcomms)    31     0     1     1  ALLESPID:
+(seq_comm_printcomms)    32     0     1     1  CPLALLESPID:
+(seq_comm_printcomms)    33     0     1     1  ESP:
+(seq_comm_printcomms)    34     0     1     1  CPLESP:
+(seq_comm_printcomms)    35     0     1     1  ALLIACID:
+(seq_comm_printcomms)    36     0     1     1  CPLALLIACID:
+(seq_comm_printcomms)    37     0     1     1  IAC:
+(seq_comm_printcomms)    38     0     1     1  CPLIAC:
+ (t_initf) Read in prof_inparm namelist from: drv_in
+ (t_initf) Using profile_disable=          F
+ (t_initf)       profile_timer=                      4
+ (t_initf)       profile_depth_limit=                4
+ (t_initf)       profile_detail_limit=               2
+ (t_initf)       profile_barrier=          F
+ (t_initf)       profile_outpe_num=                  1
+ (t_initf)       profile_outpe_stride=               0
+ (t_initf)       profile_single_file=      F
+ (t_initf)       profile_global_stats=     T
+ (t_initf)       profile_ovhd_measurement= F
+ (t_initf)       profile_add_detail=       F
+ (t_initf)       profile_papi_enable=      F
+
+
+  1 pes participating in computation for CLM
+
+-----------------------------------
+
+NODE#  NAME
+(    0)  galaxy-tools.novalocal
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Variable not found
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ clmfates_interfaceMod.F90::FatesReadPFTs :: CLM reading ED/FATES  PFTs 
+ clmfates_interfaceMod.F90:: reading fates_mort_freezetol
+ clmfates_interfaceMod.F90:: reading fates_recruit_hgt_min
+ clmfates_interfaceMod.F90:: reading fates_fire_crown_depth_frac
+ clmfates_interfaceMod.F90:: reading fates_fire_bark_scaler
+ clmfates_interfaceMod.F90:: reading fates_fire_crown_kill
+ clmfates_interfaceMod.F90:: reading fates_recruit_initd
+ clmfates_interfaceMod.F90:: reading fates_seed_suppl
+ clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_ballberry
+ clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_medlyn
+ clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_intercept
+ clmfates_interfaceMod.F90:: reading fates_lf_flab
+ clmfates_interfaceMod.F90:: reading fates_lf_fcel
+ clmfates_interfaceMod.F90:: reading fates_lf_flig
+ clmfates_interfaceMod.F90:: reading fates_fr_flab
+ clmfates_interfaceMod.F90:: reading fates_fr_fcel
+ clmfates_interfaceMod.F90:: reading fates_fr_flig
+ clmfates_interfaceMod.F90:: reading fates_leaf_xl
+ clmfates_interfaceMod.F90:: reading fates_leaf_clumping_index
+ clmfates_interfaceMod.F90:: reading fates_leaf_c3psn
+ clmfates_interfaceMod.F90:: reading fates_smpso
+ clmfates_interfaceMod.F90:: reading fates_smpsc
+ clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_curvature
+ clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_intercept
+ clmfates_interfaceMod.F90:: reading fates_prescribed_npp_canopy
+ clmfates_interfaceMod.F90:: reading fates_prescribed_npp_understory
+ clmfates_interfaceMod.F90:: reading fates_prescribed_mortality_canopy
+ clmfates_interfaceMod.F90:: reading fates_prescribed_mortality_understory
+ clmfates_interfaceMod.F90:: reading fates_prescribed_recruitment
+ clmfates_interfaceMod.F90:: reading fates_fire_alpha_SH
+ clmfates_interfaceMod.F90:: reading fates_allom_frbstor_repro
+ clmfates_interfaceMod.F90:: reading fates_hydr_p_taper
+ clmfates_interfaceMod.F90:: reading fates_hydr_rs2
+ clmfates_interfaceMod.F90:: reading fates_hydr_srl
+ clmfates_interfaceMod.F90:: reading fates_hydr_rfrac_stem
+ clmfates_interfaceMod.F90:: reading fates_hydr_avuln_gs
+ clmfates_interfaceMod.F90:: reading fates_hydr_p50_gs
+ clmfates_interfaceMod.F90:: reading fates_mort_bmort
+ clmfates_interfaceMod.F90:: reading fates_mort_r_size_senescence
+ clmfates_interfaceMod.F90:: reading fates_mort_ip_size_senescence
+ clmfates_interfaceMod.F90:: reading fates_mort_r_age_senescence
+ clmfates_interfaceMod.F90:: reading fates_mort_ip_age_senescence
+ clmfates_interfaceMod.F90:: reading fates_mort_scalar_coldstress
+ clmfates_interfaceMod.F90:: reading fates_mort_scalar_cstarvation
+ clmfates_interfaceMod.F90:: reading fates_mort_scalar_hydrfailure
+ clmfates_interfaceMod.F90:: reading fates_mort_hf_sm_threshold
+ clmfates_interfaceMod.F90:: reading fates_mort_hf_flc_threshold
+ clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxha
+ clmfates_interfaceMod.F90:: reading fates_leaf_jmaxha
+ clmfates_interfaceMod.F90:: reading fates_leaf_tpuha
+ clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxhd
+ clmfates_interfaceMod.F90:: reading fates_leaf_jmaxhd
+ clmfates_interfaceMod.F90:: reading fates_leaf_tpuhd
+ clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxse
+ clmfates_interfaceMod.F90:: reading fates_leaf_jmaxse
+ clmfates_interfaceMod.F90:: reading fates_leaf_tpuse
+ clmfates_interfaceMod.F90:: reading fates_seed_germination_rate
+ clmfates_interfaceMod.F90:: reading fates_seed_decay_rate
+ clmfates_interfaceMod.F90:: reading fates_trim_limit
+ clmfates_interfaceMod.F90:: reading fates_trim_inc
+ clmfates_interfaceMod.F90:: reading fates_leaf_diameter
+ clmfates_interfaceMod.F90:: reading fates_z0mr
+ clmfates_interfaceMod.F90:: reading fates_displar
+ clmfates_interfaceMod.F90:: reading fates_phenflush_fraction
+ clmfates_interfaceMod.F90:: reading fates_phen_cold_size_threshold
+ clmfates_interfaceMod.F90:: reading fates_phen_stem_drop_fraction
+ clmfates_interfaceMod.F90:: reading fates_eca_decompmicc
+ clmfates_interfaceMod.F90:: reading fates_eca_km_nh4
+ clmfates_interfaceMod.F90:: reading fates_eca_vmax_nh4
+ clmfates_interfaceMod.F90:: reading fates_eca_km_no3
+ clmfates_interfaceMod.F90:: reading fates_eca_vmax_no3
+ clmfates_interfaceMod.F90:: reading fates_eca_km_p
+ clmfates_interfaceMod.F90:: reading fates_eca_vmax_p
+ clmfates_interfaceMod.F90:: reading fates_eca_km_ptase
+ clmfates_interfaceMod.F90:: reading fates_eca_vmax_ptase
+ clmfates_interfaceMod.F90:: reading fates_eca_alpha_ptase
+ clmfates_interfaceMod.F90:: reading fates_eca_lambda_ptase
+ clmfates_interfaceMod.F90:: reading fates_prescribed_nuptake
+ clmfates_interfaceMod.F90:: reading fates_prescribed_puptake
+ clmfates_interfaceMod.F90:: reading fates_rholvis
+ clmfates_interfaceMod.F90:: reading fates_rholnir
+ clmfates_interfaceMod.F90:: reading fates_rhosvis
+ clmfates_interfaceMod.F90:: reading fates_rhosnir
+ clmfates_interfaceMod.F90:: reading fates_taulvis
+ clmfates_interfaceMod.F90:: reading fates_taulnir
+ clmfates_interfaceMod.F90:: reading fates_tausvis
+ clmfates_interfaceMod.F90:: reading fates_tausnir
+ clmfates_interfaceMod.F90:: reading fates_hydr_avuln_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_p50_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_thetas_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_epsil_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_pitlp_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_resid_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_fcap_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_pinot_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_kmax_node
+ clmfates_interfaceMod.F90:: reading fates_leaf_vcmax25top
+ NetCDF: Variable not found
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Variable not found
+ NetCDF: Variable not found