Mercurial > repos > climate > ctsm_fates
diff test-data/cesm.log @ 0:8c7414c07367 draft
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
author | climate |
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date | Wed, 21 Oct 2020 20:30:35 +0000 (2020-10-21) |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cesm.log Wed Oct 21 20:30:35 2020 +0000 @@ -0,0 +1,233 @@ +nohup: ignoring input + PIO rearranger options: + comm type =p2p + comm fcd =2denable + max pend req (comp2io) = 0 + enable_hs (comp2io) = T + enable_isend (comp2io) = F + max pend req (io2comp) = 0 + enable_hs (io2comp) = F + enable_isend (io2comp) = T +(seq_comm_setcomm) init ID ( 1 GLOBAL ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) +(seq_comm_setcomm) init ID ( 2 CPL ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) +(seq_comm_setcomm) init ID ( 5 ATM ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) +(seq_comm_joincomm) init ID ( 6 CPLATM ) join IDs = 2 5 ( npes = 1) ( nthreads = 1) +(seq_comm_jcommarr) init ID ( 3 ALLATMID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) +(seq_comm_joincomm) init ID ( 4 CPLALLATMID ) join IDs = 2 3 ( npes = 1) ( nthreads = 1) +(seq_comm_setcomm) init ID ( 9 LND ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) +(seq_comm_joincomm) init ID ( 10 CPLLND ) join IDs = 2 9 ( npes = 1) ( nthreads = 1) +(seq_comm_jcommarr) init ID ( 7 ALLLNDID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) +(seq_comm_joincomm) init ID ( 8 CPLALLLNDID ) join IDs = 2 7 ( npes = 1) ( nthreads = 1) +(seq_comm_setcomm) init ID ( 13 ICE ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) +(seq_comm_joincomm) init ID ( 14 CPLICE ) join IDs = 2 13 ( npes = 1) ( nthreads = 1) +(seq_comm_jcommarr) init ID ( 11 ALLICEID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) +(seq_comm_joincomm) init ID ( 12 CPLALLICEID ) join IDs = 2 11 ( npes = 1) ( nthreads = 1) +(seq_comm_setcomm) init ID ( 17 OCN ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) +(seq_comm_joincomm) init ID ( 18 CPLOCN ) join IDs = 2 17 ( npes = 1) ( nthreads = 1) +(seq_comm_jcommarr) init ID ( 15 ALLOCNID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) +(seq_comm_joincomm) init ID ( 16 CPLALLOCNID ) join IDs = 2 15 ( npes = 1) ( nthreads = 1) +(seq_comm_setcomm) init ID ( 21 ROF ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) +(seq_comm_joincomm) init ID ( 22 CPLROF ) join IDs = 2 21 ( npes = 1) ( nthreads = 1) +(seq_comm_jcommarr) init ID ( 19 ALLROFID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) +(seq_comm_joincomm) init ID ( 20 CPLALLROFID ) join IDs = 2 19 ( npes = 1) ( nthreads = 1) +(seq_comm_setcomm) init ID ( 25 GLC ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) +(seq_comm_joincomm) init ID ( 26 CPLGLC ) join IDs = 2 25 ( npes = 1) ( nthreads = 1) +(seq_comm_jcommarr) init ID ( 23 ALLGLCID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) +(seq_comm_joincomm) init ID ( 24 CPLALLGLCID ) join IDs = 2 23 ( npes = 1) ( nthreads = 1) +(seq_comm_setcomm) init ID ( 29 WAV ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) +(seq_comm_joincomm) init ID ( 30 CPLWAV ) join IDs = 2 29 ( npes = 1) ( nthreads = 1) +(seq_comm_jcommarr) init ID ( 27 ALLWAVID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) +(seq_comm_joincomm) init ID ( 28 CPLALLWAVID ) join IDs = 2 27 ( npes = 1) ( nthreads = 1) +(seq_comm_setcomm) init ID ( 33 ESP ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) +(seq_comm_joincomm) init ID ( 34 CPLESP ) join IDs = 2 33 ( npes = 1) ( nthreads = 1) +(seq_comm_jcommarr) init ID ( 31 ALLESPID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) +(seq_comm_joincomm) init ID ( 32 CPLALLESPID ) join IDs = 2 31 ( npes = 1) ( nthreads = 1) +(seq_comm_setcomm) init ID ( 37 IAC ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) +(seq_comm_joincomm) init ID ( 38 CPLIAC ) join IDs = 2 37 ( npes = 1) ( nthreads = 1) +(seq_comm_jcommarr) init ID ( 35 ALLIACID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) +(seq_comm_joincomm) init ID ( 36 CPLALLIACID ) join IDs = 2 35 ( npes = 1) ( nthreads = 1) +(seq_comm_printcomms) 1 0 1 1 GLOBAL: +(seq_comm_printcomms) 2 0 1 1 CPL: +(seq_comm_printcomms) 3 0 1 1 ALLATMID: +(seq_comm_printcomms) 4 0 1 1 CPLALLATMID: +(seq_comm_printcomms) 5 0 1 1 ATM: +(seq_comm_printcomms) 6 0 1 1 CPLATM: +(seq_comm_printcomms) 7 0 1 1 ALLLNDID: +(seq_comm_printcomms) 8 0 1 1 CPLALLLNDID: +(seq_comm_printcomms) 9 0 1 1 LND: +(seq_comm_printcomms) 10 0 1 1 CPLLND: +(seq_comm_printcomms) 11 0 1 1 ALLICEID: +(seq_comm_printcomms) 12 0 1 1 CPLALLICEID: +(seq_comm_printcomms) 13 0 1 1 ICE: +(seq_comm_printcomms) 14 0 1 1 CPLICE: +(seq_comm_printcomms) 15 0 1 1 ALLOCNID: +(seq_comm_printcomms) 16 0 1 1 CPLALLOCNID: +(seq_comm_printcomms) 17 0 1 1 OCN: +(seq_comm_printcomms) 18 0 1 1 CPLOCN: +(seq_comm_printcomms) 19 0 1 1 ALLROFID: +(seq_comm_printcomms) 20 0 1 1 CPLALLROFID: +(seq_comm_printcomms) 21 0 1 1 ROF: +(seq_comm_printcomms) 22 0 1 1 CPLROF: +(seq_comm_printcomms) 23 0 1 1 ALLGLCID: +(seq_comm_printcomms) 24 0 1 1 CPLALLGLCID: +(seq_comm_printcomms) 25 0 1 1 GLC: +(seq_comm_printcomms) 26 0 1 1 CPLGLC: +(seq_comm_printcomms) 27 0 1 1 ALLWAVID: +(seq_comm_printcomms) 28 0 1 1 CPLALLWAVID: +(seq_comm_printcomms) 29 0 1 1 WAV: +(seq_comm_printcomms) 30 0 1 1 CPLWAV: +(seq_comm_printcomms) 31 0 1 1 ALLESPID: +(seq_comm_printcomms) 32 0 1 1 CPLALLESPID: +(seq_comm_printcomms) 33 0 1 1 ESP: +(seq_comm_printcomms) 34 0 1 1 CPLESP: +(seq_comm_printcomms) 35 0 1 1 ALLIACID: +(seq_comm_printcomms) 36 0 1 1 CPLALLIACID: +(seq_comm_printcomms) 37 0 1 1 IAC: +(seq_comm_printcomms) 38 0 1 1 CPLIAC: + (t_initf) Read in prof_inparm namelist from: drv_in + (t_initf) Using profile_disable= F + (t_initf) profile_timer= 4 + (t_initf) profile_depth_limit= 4 + (t_initf) profile_detail_limit= 2 + (t_initf) profile_barrier= F + (t_initf) profile_outpe_num= 1 + (t_initf) profile_outpe_stride= 0 + (t_initf) profile_single_file= F + (t_initf) profile_global_stats= T + (t_initf) profile_ovhd_measurement= F + (t_initf) profile_add_detail= F + (t_initf) profile_papi_enable= F + + + 1 pes participating in computation for CLM + +----------------------------------- + +NODE# NAME +( 0) galaxy-tools.novalocal + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Variable not found + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + clmfates_interfaceMod.F90::FatesReadPFTs :: CLM reading ED/FATES PFTs + clmfates_interfaceMod.F90:: reading fates_mort_freezetol + clmfates_interfaceMod.F90:: reading fates_recruit_hgt_min + clmfates_interfaceMod.F90:: reading fates_fire_crown_depth_frac + clmfates_interfaceMod.F90:: reading fates_fire_bark_scaler + clmfates_interfaceMod.F90:: reading fates_fire_crown_kill + clmfates_interfaceMod.F90:: reading fates_recruit_initd + clmfates_interfaceMod.F90:: reading fates_seed_suppl + clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_ballberry + clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_medlyn + clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_intercept + clmfates_interfaceMod.F90:: reading fates_lf_flab + clmfates_interfaceMod.F90:: reading fates_lf_fcel + clmfates_interfaceMod.F90:: reading fates_lf_flig + clmfates_interfaceMod.F90:: reading fates_fr_flab + clmfates_interfaceMod.F90:: reading fates_fr_fcel + clmfates_interfaceMod.F90:: reading fates_fr_flig + clmfates_interfaceMod.F90:: reading fates_leaf_xl + clmfates_interfaceMod.F90:: reading fates_leaf_clumping_index + clmfates_interfaceMod.F90:: reading fates_leaf_c3psn + clmfates_interfaceMod.F90:: reading fates_smpso + clmfates_interfaceMod.F90:: reading fates_smpsc + clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_curvature + clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_intercept + clmfates_interfaceMod.F90:: reading fates_prescribed_npp_canopy + clmfates_interfaceMod.F90:: reading fates_prescribed_npp_understory + clmfates_interfaceMod.F90:: reading fates_prescribed_mortality_canopy + clmfates_interfaceMod.F90:: reading fates_prescribed_mortality_understory + clmfates_interfaceMod.F90:: reading fates_prescribed_recruitment + clmfates_interfaceMod.F90:: reading fates_fire_alpha_SH + clmfates_interfaceMod.F90:: reading fates_allom_frbstor_repro + clmfates_interfaceMod.F90:: reading fates_hydr_p_taper + clmfates_interfaceMod.F90:: reading fates_hydr_rs2 + clmfates_interfaceMod.F90:: reading fates_hydr_srl + clmfates_interfaceMod.F90:: reading fates_hydr_rfrac_stem + clmfates_interfaceMod.F90:: reading fates_hydr_avuln_gs + clmfates_interfaceMod.F90:: reading fates_hydr_p50_gs + clmfates_interfaceMod.F90:: reading fates_mort_bmort + clmfates_interfaceMod.F90:: reading fates_mort_r_size_senescence + clmfates_interfaceMod.F90:: reading fates_mort_ip_size_senescence + clmfates_interfaceMod.F90:: reading fates_mort_r_age_senescence + clmfates_interfaceMod.F90:: reading fates_mort_ip_age_senescence + clmfates_interfaceMod.F90:: reading fates_mort_scalar_coldstress + clmfates_interfaceMod.F90:: reading fates_mort_scalar_cstarvation + clmfates_interfaceMod.F90:: reading fates_mort_scalar_hydrfailure + clmfates_interfaceMod.F90:: reading fates_mort_hf_sm_threshold + clmfates_interfaceMod.F90:: reading fates_mort_hf_flc_threshold + clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxha + clmfates_interfaceMod.F90:: reading fates_leaf_jmaxha + clmfates_interfaceMod.F90:: reading fates_leaf_tpuha + clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxhd + clmfates_interfaceMod.F90:: reading fates_leaf_jmaxhd + clmfates_interfaceMod.F90:: reading fates_leaf_tpuhd + clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxse + clmfates_interfaceMod.F90:: reading fates_leaf_jmaxse + clmfates_interfaceMod.F90:: reading fates_leaf_tpuse + clmfates_interfaceMod.F90:: reading fates_seed_germination_rate + clmfates_interfaceMod.F90:: reading fates_seed_decay_rate + clmfates_interfaceMod.F90:: reading fates_trim_limit + clmfates_interfaceMod.F90:: reading fates_trim_inc + clmfates_interfaceMod.F90:: reading fates_leaf_diameter + clmfates_interfaceMod.F90:: reading fates_z0mr + clmfates_interfaceMod.F90:: reading fates_displar + clmfates_interfaceMod.F90:: reading fates_phenflush_fraction + clmfates_interfaceMod.F90:: reading fates_phen_cold_size_threshold + clmfates_interfaceMod.F90:: reading fates_phen_stem_drop_fraction + clmfates_interfaceMod.F90:: reading fates_eca_decompmicc + clmfates_interfaceMod.F90:: reading fates_eca_km_nh4 + clmfates_interfaceMod.F90:: reading fates_eca_vmax_nh4 + clmfates_interfaceMod.F90:: reading fates_eca_km_no3 + clmfates_interfaceMod.F90:: reading fates_eca_vmax_no3 + clmfates_interfaceMod.F90:: reading fates_eca_km_p + clmfates_interfaceMod.F90:: reading fates_eca_vmax_p + clmfates_interfaceMod.F90:: reading fates_eca_km_ptase + clmfates_interfaceMod.F90:: reading fates_eca_vmax_ptase + clmfates_interfaceMod.F90:: reading fates_eca_alpha_ptase + clmfates_interfaceMod.F90:: reading fates_eca_lambda_ptase + clmfates_interfaceMod.F90:: reading fates_prescribed_nuptake + clmfates_interfaceMod.F90:: reading fates_prescribed_puptake + clmfates_interfaceMod.F90:: reading fates_rholvis + clmfates_interfaceMod.F90:: reading fates_rholnir + clmfates_interfaceMod.F90:: reading fates_rhosvis + clmfates_interfaceMod.F90:: reading fates_rhosnir + clmfates_interfaceMod.F90:: reading fates_taulvis + clmfates_interfaceMod.F90:: reading fates_taulnir + clmfates_interfaceMod.F90:: reading fates_tausvis + clmfates_interfaceMod.F90:: reading fates_tausnir + clmfates_interfaceMod.F90:: reading fates_hydr_avuln_node + clmfates_interfaceMod.F90:: reading fates_hydr_p50_node + clmfates_interfaceMod.F90:: reading fates_hydr_thetas_node + clmfates_interfaceMod.F90:: reading fates_hydr_epsil_node + clmfates_interfaceMod.F90:: reading fates_hydr_pitlp_node + clmfates_interfaceMod.F90:: reading fates_hydr_resid_node + clmfates_interfaceMod.F90:: reading fates_hydr_fcap_node + clmfates_interfaceMod.F90:: reading fates_hydr_pinot_node + clmfates_interfaceMod.F90:: reading fates_hydr_kmax_node + clmfates_interfaceMod.F90:: reading fates_leaf_vcmax25top + NetCDF: Variable not found + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Invalid dimension ID or name + NetCDF: Variable not found + NetCDF: Variable not found