clustalomega: clustalomega/clustal-omega-0.2.0/src/hhalign/Makefile.in annotate

annotate clustalomega/clustal-omega-0.2.0/src/hhalign/Makefile.in @ 0:ff1768533a07

Migrated tool version 0.2 from old tool shed archive to new tool shed repository

author	clustalomega
date	Tue, 07 Jun 2011 17:04:25 -0400
parents
children

rev	line source
0 ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	1 # Makefile.in generated by automake 1.11.1 from Makefile.am.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	2 # @configure_input@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	3
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	4 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	5 # 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation,
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	6 # Inc.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	7 # This Makefile.in is free software; the Free Software Foundation
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	8 # gives unlimited permission to copy and/or distribute it,
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	9 # with or without modifications, as long as this notice is preserved.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	10
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	11 # This program is distributed in the hope that it will be useful,
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	12 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	13 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	14 # PARTICULAR PURPOSE.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	15
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	16 @SET_MAKE@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	17
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	18 # Some useful automake documentation:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	19 # http://www.openismus.com/documents/linux/automake/automake.shtml
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	20 # http://www.bioinf.uni-freiburg.de/~mmann/HowTo/automake.html
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	21
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	22 #SUBDIRS =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	23 #EXTRA_DIST =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	24 # LDADD = foofiles/libfoo.a
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	25
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	26
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	27 VPATH = @srcdir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	28 pkgdatadir = $(datadir)/@PACKAGE@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	29 pkgincludedir = $(includedir)/@PACKAGE@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	30 pkglibdir = $(libdir)/@PACKAGE@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	31 pkglibexecdir = $(libexecdir)/@PACKAGE@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	32 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	33 install_sh_DATA = $(install_sh) -c -m 644
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	34 install_sh_PROGRAM = $(install_sh) -c
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	35 install_sh_SCRIPT = $(install_sh) -c
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	36 INSTALL_HEADER = $(INSTALL_DATA)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	37 transform = $(program_transform_name)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	38 NORMAL_INSTALL = :
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	39 PRE_INSTALL = :
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	40 POST_INSTALL = :
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	41 NORMAL_UNINSTALL = :
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	42 PRE_UNINSTALL = :
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	43 POST_UNINSTALL = :
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	44 build_triplet = @build@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	45 host_triplet = @host@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	46 subdir = src/hhalign
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	47 DIST_COMMON = $(library_include_HEADERS) $(srcdir)/Makefile.am \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	48 $(srcdir)/Makefile.in
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	49 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	50 am__aclocal_m4_deps = $(top_srcdir)/m4/ax_prefix_config_h.m4 \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	51 $(top_srcdir)/m4/libtool.m4 $(top_srcdir)/m4/ltoptions.m4 \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	52 $(top_srcdir)/m4/ltsugar.m4 $(top_srcdir)/m4/ltversion.m4 \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	53 $(top_srcdir)/m4/lt~obsolete.m4 $(top_srcdir)/m4/ax_openmp.m4 \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	54 $(top_srcdir)/configure.ac
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	55 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	56 $(ACLOCAL_M4)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	57 mkinstalldirs = $(install_sh) -d
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	58 CONFIG_HEADER = $(top_builddir)/src/config.h
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	59 CONFIG_CLEAN_FILES =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	60 CONFIG_CLEAN_VPATH_FILES =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	61 LTLIBRARIES = $(noinst_LTLIBRARIES)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	62 libhhalign_la_LIBADD =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	63 am_libhhalign_la_OBJECTS = hhalign.lo
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	64 libhhalign_la_OBJECTS = $(am_libhhalign_la_OBJECTS)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	65 DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	66 depcomp = $(SHELL) $(top_srcdir)/depcomp
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	67 am__depfiles_maybe = depfiles
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	68 am__mv = mv -f
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	69 CXXCOMPILE = $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	70 $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	71 LTCXXCOMPILE = $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	72 --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	73 $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	74 CXXLD = $(CXX)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	75 CXXLINK = $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	76 --mode=link $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	77 $(LDFLAGS) -o $@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	78 COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	79 $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	80 LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	81 --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	82 $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	83 CCLD = $(CC)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	84 LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	85 --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	86 $(LDFLAGS) -o $@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	87 SOURCES = $(libhhalign_la_SOURCES)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	88 DIST_SOURCES = $(libhhalign_la_SOURCES)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	89 am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" \| sed 's\|.\|.\|g'`;
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	90 am__vpath_adj = case $$p in \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	91 $(srcdir)/*) f=`echo "$$p" \| sed "s\|^$$srcdirstrip/\|\|"`;; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	92 *) f=$$p;; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	93 esac;
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	94 am__strip_dir = f=`echo $$p \| sed -e 's\|^.*/\|\|'`;
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	95 am__install_max = 40
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	96 am__nobase_strip_setup = \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	97 srcdirstrip=`echo "$(srcdir)" \| sed 's/[].[^$$\\*\|]/\\\\&/g'`
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	98 am__nobase_strip = \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	99 for p in $$list; do echo "$$p"; done \| sed -e "s\|$$srcdirstrip/\|\|"
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	100 am__nobase_list = $(am__nobase_strip_setup); \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	101 for p in $$list; do echo "$$p $$p"; done \| \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	102 sed "s\| $$srcdirstrip/\| \|;"' / .\//!s/ ./ ./; s,$ .$/[^/]$$,\1,' \| \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	103 $(AWK) 'BEGIN { files["."] = "" } { files[$$2] = files[$$2] " " $$1; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	104 if (++n[$$2] == $(am__install_max)) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	105 { print $$2, files[$$2]; n[$$2] = 0; files[$$2] = "" } } \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	106 END { for (dir in files) print dir, files[dir] }'
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	107 am__base_list = \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	108 sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' \| \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	109 sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g'
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	110 am__installdirs = "$(DESTDIR)$(library_includedir)"
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	111 HEADERS = $(library_include_HEADERS)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	112 ETAGS = etags
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	113 CTAGS = ctags
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	114 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	115 ACLOCAL = @ACLOCAL@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	116 AMTAR = @AMTAR@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	117 AM_CFLAGS = @AM_CFLAGS@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	118 AM_CXXFLAGS = -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 @OPENMP_CXXFLAGS@ @AM_CXXFLAGS@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	119 AM_LDFLAGS = @AM_LDFLAGS@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	120 AR = @AR@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	121 AUTOCONF = @AUTOCONF@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	122 AUTOHEADER = @AUTOHEADER@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	123 AUTOMAKE = @AUTOMAKE@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	124 AWK = @AWK@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	125 CC = @CC@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	126 CCDEPMODE = @CCDEPMODE@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	127 CFLAGS = @CFLAGS@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	128 CPP = @CPP@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	129 CPPFLAGS = @CPPFLAGS@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	130 CXX = @CXX@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	131 CXXCPP = @CXXCPP@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	132 CXXDEPMODE = @CXXDEPMODE@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	133 CXXFLAGS = @CXXFLAGS@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	134 CYGPATH_W = @CYGPATH_W@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	135 DEFS = @DEFS@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	136 DEPDIR = @DEPDIR@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	137 DSYMUTIL = @DSYMUTIL@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	138 DUMPBIN = @DUMPBIN@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	139 ECHO_C = @ECHO_C@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	140 ECHO_N = @ECHO_N@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	141 ECHO_T = @ECHO_T@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	142 EGREP = @EGREP@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	143 EXEEXT = @EXEEXT@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	144 FGREP = @FGREP@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	145 GREP = @GREP@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	146 INSTALL = @INSTALL@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	147 INSTALL_DATA = @INSTALL_DATA@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	148 INSTALL_PROGRAM = @INSTALL_PROGRAM@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	149 INSTALL_SCRIPT = @INSTALL_SCRIPT@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	150 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	151 LD = @LD@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	152 LDFLAGS = @LDFLAGS@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	153 LIBOBJS = @LIBOBJS@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	154 LIBS = @LIBS@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	155 LIBTOOL = @LIBTOOL@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	156 LIPO = @LIPO@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	157 LN_S = @LN_S@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	158 LTLIBOBJS = @LTLIBOBJS@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	159 MAKEINFO = @MAKEINFO@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	160 MKDIR_P = @MKDIR_P@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	161 NM = @NM@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	162 NMEDIT = @NMEDIT@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	163 OBJDUMP = @OBJDUMP@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	164 OBJEXT = @OBJEXT@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	165 OPENMP_CFLAGS = @OPENMP_CFLAGS@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	166 OPENMP_CXXFLAGS = @OPENMP_CXXFLAGS@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	167 OTOOL = @OTOOL@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	168 OTOOL64 = @OTOOL64@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	169 PACKAGE = @PACKAGE@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	170 PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	171 PACKAGE_CODENAME = @PACKAGE_CODENAME@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	172 PACKAGE_NAME = @PACKAGE_NAME@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	173 PACKAGE_STRING = @PACKAGE_STRING@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	174 PACKAGE_TARNAME = @PACKAGE_TARNAME@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	175 PACKAGE_URL = @PACKAGE_URL@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	176 PACKAGE_VERSION = @PACKAGE_VERSION@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	177 PATH_SEPARATOR = @PATH_SEPARATOR@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	178 RANLIB = @RANLIB@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	179 SED = @SED@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	180 SET_MAKE = @SET_MAKE@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	181 SHELL = @SHELL@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	182 STRIP = @STRIP@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	183 VERSION = @VERSION@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	184 abs_builddir = @abs_builddir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	185 abs_srcdir = @abs_srcdir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	186 abs_top_builddir = @abs_top_builddir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	187 abs_top_srcdir = @abs_top_srcdir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	188 ac_ct_CC = @ac_ct_CC@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	189 ac_ct_CXX = @ac_ct_CXX@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	190 ac_ct_DUMPBIN = @ac_ct_DUMPBIN@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	191 am__include = @am__include@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	192 am__leading_dot = @am__leading_dot@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	193 am__quote = @am__quote@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	194 am__tar = @am__tar@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	195 am__untar = @am__untar@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	196 bindir = @bindir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	197 build = @build@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	198 build_alias = @build_alias@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	199 build_cpu = @build_cpu@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	200 build_os = @build_os@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	201 build_vendor = @build_vendor@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	202 builddir = @builddir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	203 datadir = @datadir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	204 datarootdir = @datarootdir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	205 docdir = @docdir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	206 dvidir = @dvidir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	207 exec_prefix = @exec_prefix@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	208 host = @host@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	209 host_alias = @host_alias@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	210 host_cpu = @host_cpu@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	211 host_os = @host_os@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	212 host_vendor = @host_vendor@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	213 htmldir = @htmldir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	214 includedir = @includedir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	215 infodir = @infodir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	216 install_sh = @install_sh@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	217 libdir = @libdir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	218 libexecdir = @libexecdir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	219 localedir = @localedir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	220 localstatedir = @localstatedir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	221 lt_ECHO = @lt_ECHO@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	222 mandir = @mandir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	223 mkdir_p = @mkdir_p@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	224 oldincludedir = @oldincludedir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	225 pdfdir = @pdfdir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	226 prefix = @prefix@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	227 program_transform_name = @program_transform_name@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	228 psdir = @psdir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	229 sbindir = @sbindir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	230 sharedstatedir = @sharedstatedir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	231 srcdir = @srcdir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	232 sysconfdir = @sysconfdir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	233 target_alias = @target_alias@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	234 top_build_prefix = @top_build_prefix@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	235 top_builddir = @top_builddir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	236 top_srcdir = @top_srcdir@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	237 noinst_LTLIBRARIES = libhhalign.la
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	238 libhhalign_la_SOURCES = hhalign.cpp hhalign.h \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	239 hash-C.h hash.h hhdecl-C.h hhfunc-C.h hhfunc.h \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	240 hhmatrices-C.h hhutil-C.h \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	241 hhalignment-C.h hhalignment.h \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	242 hhfullalignment-C.h hhfullalignment.h \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	243 hhhalfalignment-C.h hhhalfalignment.h \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	244 hhhit-C.h hhhit.h hhhitlist-C.h hhhitlist.h \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	245 hhhmm-C.h hhhmm.h \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	246 util-C.h list-C.h list.h \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	247 general.h
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	248
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	249 library_includedir = $(includedir)/clustalo/hhalign
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	250 library_include_HEADERS = general.h hhfunc.h
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	251 all: all-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	252
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	253 .SUFFIXES:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	254 .SUFFIXES: .cpp .lo .o .obj
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	255 $(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	256 @for dep in $?; do \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	257 case '$(am__configure_deps)' in \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	258 $$dep) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	259 ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	260 && { if test -f $@; then exit 0; else break; fi; }; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	261 exit 1;; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	262 esac; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	263 done; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	264 echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu src/hhalign/Makefile'; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	265 $(am__cd) $(top_srcdir) && \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	266 $(AUTOMAKE) --gnu src/hhalign/Makefile
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	267 .PRECIOUS: Makefile
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	268 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	269 @case '$?' in \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	270 config.status) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	271 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	272 *) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	273 echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	274 cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	275 esac;
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	276
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	277 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	278 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	279
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	280 $(top_srcdir)/configure: $(am__configure_deps)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	281 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	282 $(ACLOCAL_M4): $(am__aclocal_m4_deps)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	283 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	284 $(am__aclocal_m4_deps):
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	285
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	286 clean-noinstLTLIBRARIES:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	287 -test -z "$(noinst_LTLIBRARIES)" \|\| rm -f $(noinst_LTLIBRARIES)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	288 @list='$(noinst_LTLIBRARIES)'; for p in $$list; do \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	289 dir="`echo $$p \| sed -e 's\|/[^/]*$$\|\|'`"; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	290 test "$$dir" != "$$p" \|\| dir=.; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	291 echo "rm -f \"$${dir}/so_locations\""; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	292 rm -f "$${dir}/so_locations"; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	293 done
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	294 libhhalign.la: $(libhhalign_la_OBJECTS) $(libhhalign_la_DEPENDENCIES)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	295 $(CXXLINK) $(libhhalign_la_OBJECTS) $(libhhalign_la_LIBADD) $(LIBS)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	296
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	297 mostlyclean-compile:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	298 -rm -f *.$(OBJEXT)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	299
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	300 distclean-compile:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	301 -rm -f *.tab.c
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	302
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	303 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hhalign.Plo@am__quote@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	304
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	305 .cpp.o:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	306 @am__fastdepCXX_TRUE@ $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	307 @am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/$.Tpo $(DEPDIR)/$.Po
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	308 @AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	309 @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	310 @am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ $<
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	311
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	312 .cpp.obj:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	313 @am__fastdepCXX_TRUE@ $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	314 @am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/$.Tpo $(DEPDIR)/$.Po
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	315 @AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	316 @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	317 @am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	318
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	319 .cpp.lo:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	320 @am__fastdepCXX_TRUE@ $(LTCXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	321 @am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/$.Tpo $(DEPDIR)/$.Plo
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	322 @AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	323 @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	324 @am__fastdepCXX_FALSE@ $(LTCXXCOMPILE) -c -o $@ $<
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	325
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	326 mostlyclean-libtool:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	327 -rm -f *.lo
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	328
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	329 clean-libtool:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	330 -rm -rf .libs _libs
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	331 install-library_includeHEADERS: $(library_include_HEADERS)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	332 @$(NORMAL_INSTALL)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	333 test -z "$(library_includedir)" \|\| $(MKDIR_P) "$(DESTDIR)$(library_includedir)"
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	334 @list='$(library_include_HEADERS)'; test -n "$(library_includedir)" \|\| list=; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	335 for p in $$list; do \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	336 if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	337 echo "$$d$$p"; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	338 done \| $(am__base_list) \| \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	339 while read files; do \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	340 echo " $(INSTALL_HEADER) $$files '$(DESTDIR)$(library_includedir)'"; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	341 $(INSTALL_HEADER) $$files "$(DESTDIR)$(library_includedir)" \|\| exit $$?; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	342 done
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	343
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	344 uninstall-library_includeHEADERS:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	345 @$(NORMAL_UNINSTALL)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	346 @list='$(library_include_HEADERS)'; test -n "$(library_includedir)" \|\| list=; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	347 files=`for p in $$list; do echo $$p; done \| sed -e 's\|^.*/\|\|'`; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	348 test -n "$$files" \|\| exit 0; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	349 echo " ( cd '$(DESTDIR)$(library_includedir)' && rm -f" $$files ")"; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	350 cd "$(DESTDIR)$(library_includedir)" && rm -f $$files
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	351
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	352 ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	353 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	354 unique=`for i in $$list; do \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	355 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	356 done \| \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	357 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	358 END { if (nonempty) { for (i in files) print i; }; }'`; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	359 mkid -fID $$unique
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	360 tags: TAGS
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	361
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	362 TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	363 $(TAGS_FILES) $(LISP)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	364 set x; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	365 here=`pwd`; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	366 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	367 unique=`for i in $$list; do \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	368 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	369 done \| \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	370 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	371 END { if (nonempty) { for (i in files) print i; }; }'`; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	372 shift; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	373 if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	374 test -n "$$unique" \|\| unique=$$empty_fix; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	375 if test $$# -gt 0; then \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	376 $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	377 "$$@" $$unique; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	378 else \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	379 $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	380 $$unique; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	381 fi; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	382 fi
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	383 ctags: CTAGS
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	384 CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	385 $(TAGS_FILES) $(LISP)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	386 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	387 unique=`for i in $$list; do \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	388 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	389 done \| \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	390 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	391 END { if (nonempty) { for (i in files) print i; }; }'`; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	392 test -z "$(CTAGS_ARGS)$$unique" \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	393 \|\| $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	394 $$unique
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	395
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	396 GTAGS:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	397 here=`$(am__cd) $(top_builddir) && pwd` \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	398 && $(am__cd) $(top_srcdir) \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	399 && gtags -i $(GTAGS_ARGS) "$$here"
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	400
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	401 distclean-tags:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	402 -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	403
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	404 distdir: $(DISTFILES)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	405 @srcdirstrip=`echo "$(srcdir)" \| sed 's/[].[^$$\\*]/\\\\&/g'`; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	406 topsrcdirstrip=`echo "$(top_srcdir)" \| sed 's/[].[^$$\\*]/\\\\&/g'`; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	407 list='$(DISTFILES)'; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	408 dist_files=`for file in $$list; do echo $$file; done \| \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	409 sed -e "s\|^$$srcdirstrip/\|\|;t" \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	410 -e "s\|^$$topsrcdirstrip/\|$(top_builddir)/\|;t"`; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	411 case $$dist_files in \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	412 /) $(MKDIR_P) `echo "$$dist_files" \| \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	413 sed '/\//!d;s\|^\|$(distdir)/\|;s,/[^/]*$$,,' \| \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	414 sort -u` ;; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	415 esac; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	416 for file in $$dist_files; do \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	417 if test -f $$file \|\| test -d $$file; then d=.; else d=$(srcdir); fi; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	418 if test -d $$d/$$file; then \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	419 dir=`echo "/$$file" \| sed -e 's,/[^/]*$$,,'`; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	420 if test -d "$(distdir)/$$file"; then \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	421 find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	422 fi; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	423 if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	424 cp -fpR $(srcdir)/$$file "$(distdir)$$dir" \|\| exit 1; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	425 find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	426 fi; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	427 cp -fpR $$d/$$file "$(distdir)$$dir" \|\| exit 1; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	428 else \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	429 test -f "$(distdir)/$$file" \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	430 \|\| cp -p $$d/$$file "$(distdir)/$$file" \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	431 \|\| exit 1; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	432 fi; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	433 done
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	434 check-am: all-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	435 check: check-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	436 all-am: Makefile $(LTLIBRARIES) $(HEADERS)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	437 installdirs:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	438 for dir in "$(DESTDIR)$(library_includedir)"; do \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	439 test -z "$$dir" \|\| $(MKDIR_P) "$$dir"; \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	440 done
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	441 install: install-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	442 install-exec: install-exec-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	443 install-data: install-data-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	444 uninstall: uninstall-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	445
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	446 install-am: all-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	447 @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	448
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	449 installcheck: installcheck-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	450 install-strip:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	451 $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	452 install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	453 `test -z '$(STRIP)' \|\| \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	454 echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	455 mostlyclean-generic:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	456
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	457 clean-generic:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	458
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	459 distclean-generic:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	460 -test -z "$(CONFIG_CLEAN_FILES)" \|\| rm -f $(CONFIG_CLEAN_FILES)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	461 -test . = "$(srcdir)" \|\| test -z "$(CONFIG_CLEAN_VPATH_FILES)" \|\| rm -f $(CONFIG_CLEAN_VPATH_FILES)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	462
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	463 maintainer-clean-generic:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	464 @echo "This command is intended for maintainers to use"
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	465 @echo "it deletes files that may require special tools to rebuild."
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	466 clean: clean-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	467
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	468 clean-am: clean-generic clean-libtool clean-noinstLTLIBRARIES \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	469 mostlyclean-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	470
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	471 distclean: distclean-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	472 -rm -rf ./$(DEPDIR)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	473 -rm -f Makefile
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	474 distclean-am: clean-am distclean-compile distclean-generic \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	475 distclean-tags
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	476
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	477 dvi: dvi-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	478
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	479 dvi-am:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	480
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	481 html: html-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	482
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	483 html-am:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	484
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	485 info: info-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	486
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	487 info-am:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	488
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	489 install-data-am: install-library_includeHEADERS
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	490
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	491 install-dvi: install-dvi-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	492
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	493 install-dvi-am:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	494
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	495 install-exec-am:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	496
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	497 install-html: install-html-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	498
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	499 install-html-am:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	500
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	501 install-info: install-info-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	502
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	503 install-info-am:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	504
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	505 install-man:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	506
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	507 install-pdf: install-pdf-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	508
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	509 install-pdf-am:
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ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	511 install-ps: install-ps-am
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ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	513 install-ps-am:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	514
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	515 installcheck-am:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	516
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	517 maintainer-clean: maintainer-clean-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	518 -rm -rf ./$(DEPDIR)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	519 -rm -f Makefile
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	520 maintainer-clean-am: distclean-am maintainer-clean-generic
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	521
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	522 mostlyclean: mostlyclean-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	523
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	524 mostlyclean-am: mostlyclean-compile mostlyclean-generic \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	525 mostlyclean-libtool
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	526
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	527 pdf: pdf-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	528
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	529 pdf-am:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	530
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	531 ps: ps-am
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	532
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	533 ps-am:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	534
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	535 uninstall-am: uninstall-library_includeHEADERS
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	536
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	537 .MAKE: install-am install-strip
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	538
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	539 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-generic \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	540 clean-libtool clean-noinstLTLIBRARIES ctags distclean \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	541 distclean-compile distclean-generic distclean-libtool \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	542 distclean-tags distdir dvi dvi-am html html-am info info-am \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	543 install install-am install-data install-data-am install-dvi \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	544 install-dvi-am install-exec install-exec-am install-html \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	545 install-html-am install-info install-info-am \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	546 install-library_includeHEADERS install-man install-pdf \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	547 install-pdf-am install-ps install-ps-am install-strip \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	548 installcheck installcheck-am installdirs maintainer-clean \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	549 maintainer-clean-generic mostlyclean mostlyclean-compile \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	550 mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	551 tags uninstall uninstall-am uninstall-library_includeHEADERS
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	552
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	553
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	554 # Tell versions [3.59,3.63) of GNU make to not export all variables.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	555 # Otherwise a system limit (for SysV at least) may be exceeded.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository clustalomega parents: diff changeset	556 .NOEXPORT:

Mercurial > repos > clustalomega > clustalomega

annotate clustalomega/clustal-omega-0.2.0/src/hhalign/Makefile.in @ 0:ff1768533a07