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annotate clustalomega/clustal-omega-0.2.0/src/squid/Makefile.am @ 0:ff1768533a07

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Migrated tool version 0.2 from old tool shed archive to new tool shed repository
author clustalomega
date Tue, 07 Jun 2011 17:04:25 -0400
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ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
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1 # Replaces squids own automake files
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2 #
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3 # Some useful automake documentation:
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4 # http://www.openismus.com/documents/linux/automake/automake.shtml
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5 # http://www.bioinf.uni-freiburg.de/~mmann/HowTo/automake.html
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7 #SUBDIRS =
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8 EXTRA_DIST = COPYRIGHT LICENSE 00README clustalo.README squid-1.9g.tar.gz
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9 #LDADD =
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11 # need DCLUSTALO here to enable Clustal specific squid patches
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12 # CLUSTALO is also defined in ../config.h which is included by squid.h
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13 # but some files do not include squid.h
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14 AM_CFLAGS = -DCLUSTALO -DSRE_STRICT_ANSI @AM_CFLAGS@
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16 noinst_LTLIBRARIES = libsquid.la
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18 libsquid_la_SOURCES = a2m.c aligneval.c alignio.c \
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19 clustal.c cluster.c \
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20 dayhoff.c \
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21 eps.c \
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22 file.c \
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23 getopt.c gki.c gki.h gsi.c gsi.h gsi64.c gsi64.h \
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24 hsregex.c \
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25 iupac.c \
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26 msa.c msa.h msf.c \
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27 phylip.c \
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28 revcomp.c rk.c rk.h \
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29 selex.c seqencode.c shuffle.c sqerror.c sqfuncs.h sqio.c squid.h squidcore.c \
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30 sre_ctype.c sre_math.c sre_random.c sre_random.h sre_string.c \
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31 ssi.c ssi.h stack.c stockholm.c stockholm.h stopwatch.c stopwatch.h \
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32 translate.c types.c vectorops.c \
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33 vectorops.h version.h \
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34 weight.c
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36 library_includedir=$(includedir)/clustalo/squid
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38 library_include_HEADERS = gki.h gsi64.h msa.h rk.h \
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39 squid.h stopwatch.h sqfuncs.h \
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40 sre_random.h ssi.h stockholm.h \
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41 vectorops.h version.h
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