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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="discoSnp_plus_plus" version="2.1.7">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://gatb-tools.gforge.inria.fr/versions/src/DiscoSNP++-2.1.7-Source.tar.gz</action>
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7 <action type="shell_command">/bin/bash compile_discoSnp++.sh</action>
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8
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9 <!-- move directories into $INSTALL_DIR -->
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10 <action type="move_directory_files">
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11 <source_directory>build</source_directory>
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12 <destination_directory>$INSTALL_DIR/build</destination_directory>
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13 </action>
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14 <action type="move_directory_files">
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15 <source_directory>tools</source_directory>
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16 <destination_directory>$INSTALL_DIR/tools</destination_directory>
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17 </action>
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18
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19 <!-- move files into $INSTALL_DIR -->
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20 <action type="move_file">
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21 <source>run_discoSnp++.sh</source>
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22 <destination>$INSTALL_DIR</destination>
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23 </action>
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24
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25 <action type="move_file">
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26 <source>run_VCF_creator.sh</source>
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27 <destination>$INSTALL_DIR</destination>
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28 </action>
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29
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30 <action type="chmod">
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31 <file mode="755">$INSTALL_DIR/run_VCF_creator.sh</file>
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32 </action>
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33
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34
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35 <!-- create env.sh -->
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36 <action type="set_environment">
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37 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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38 </action>
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39 </actions>
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40 </install>
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41 <readme>
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42 This package installs discoSNP++ from the sources availbale in the Colib'reads web site.
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43 </readme>
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44 </package>
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45 </tool_dependency>
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