diff README.rst @ 0:33b65dacd377 draft

"planemo upload for repository https://github.com/computational-metabolomics/dimspy-galaxy commit 6321871098b2c4bc9e321d20b7e66fff3d641839"
author computational-metabolomics
date Sat, 11 Apr 2020 16:51:19 -0400
parents
children c72868b80c29
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.rst	Sat Apr 11 16:51:19 2020 -0400
@@ -0,0 +1,66 @@
+Galaxy tool wrappers for DIMSpy
+========================
+|Build Status (Travis)| |Git| |Bioconda| |License|
+
+Galaxy tool wrappers for Python package DIMSpy: data processing of direct-infusion mass spectrometry (DIMS)-based metabolomics and lipidomics data
+
+Source code: https://github.com/computational-metabolomics/dimspy
+
+PyPI (The Python Package Index): https://pypi.org/project/dimspy
+
+
+Version
+--------
+v1.4.0+Galaxy0 (`DIMSpy v1.4.0 <https://pypi.org/project/dimspy/1.4.0/>`_)
+
+
+Galaxy
+-------
+`Galaxy <https://galaxyproject.org>`_ is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. 
+
+
+Authors, contributors & Contacts
+----------------------------------
+ - Ralf J. M. Weber (r.j.weber@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`_
+ - Thomas N. Lawson (tnl495@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`_
+ - Martin R. Jones (m.r.jones.1@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`_
+
+
+Bugs
+----
+Please report any bugs that you find `here <https://github.com/computational-metabolomics/dimspy-galaxy/issues>`_.
+Or fork the repository on `GitHub <https://github.com/computational-metabolomics/dimspy-galaxy/>`_
+and create a pull request (PR). We welcome all contributions, and we
+will help you to make the PR if you are new to `git`.
+
+
+Changes
+-------
+v1.4.0+galaxy0
+  - First stable release
+  - Final release (Python 2-based version `DIMSpy <https://pypi.org/project/dimspy/1.4.0/>`_)
+
+
+Licenses
+-------
+DIMSpy and Galaxy tools are released under the GNU General Public License v3.0 (see `LICENSE file <https://github.com/computational-metabolomics/dimspy-galaxy/blob/master/LICENSE>`_)
+
+**Third-party licenses and copyright**
+
+RawFileReader reading tool. Copyright © 2016 by Thermo Fisher Scientific, Inc. All rights reserved. See `RawFileReaderLicense <https://github.com/computational-metabolomics/dimspy/blob/master/RawFileReaderLicense.rst>`_ for licensing information.
+Using DIMSpy software for processing Thermo Fisher Scientific *.raw files implies the acceptance of the RawFileReader license terms.
+Anyone receiving RawFileReader as part of a larger software distribution (in the current context, as part of DIMSpy) is considered an "end user" under
+section 3.3 of the RawFileReader License, and is not granted rights to redistribute RawFileReader.
+
+
+.. |Build Status (Travis)| image:: https://img.shields.io/travis/computational-metabolomics/dimspy-galaxy.svg?style=flat&maxAge=3600&label=Travis-CI
+   :target: https://travis-ci.com/computational-metabolomics/dimspy-galaxy
+
+.. |Git| image:: https://img.shields.io/badge/repository-GitHub-blue.svg?style=flat&maxAge=3600
+   :target: https://github.com/computational-metabolomics/dimspy
+
+.. |Bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat&maxAge=3600
+   :target: http://bioconda.github.io/recipes/dimspy/README.html
+
+.. |License| image:: https://img.shields.io/badge/License-GPL%20v3-blue.svg
+   :target: https://www.gnu.org/licenses/gpl-3.0.html