Mercurial > repos > computational-metabolomics > dimspy_align_samples
diff README.rst @ 0:33b65dacd377 draft
"planemo upload for repository https://github.com/computational-metabolomics/dimspy-galaxy commit 6321871098b2c4bc9e321d20b7e66fff3d641839"
author | computational-metabolomics |
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date | Sat, 11 Apr 2020 16:51:19 -0400 |
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children | c72868b80c29 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Sat Apr 11 16:51:19 2020 -0400 @@ -0,0 +1,66 @@ +Galaxy tool wrappers for DIMSpy +======================== +|Build Status (Travis)| |Git| |Bioconda| |License| + +Galaxy tool wrappers for Python package DIMSpy: data processing of direct-infusion mass spectrometry (DIMS)-based metabolomics and lipidomics data + +Source code: https://github.com/computational-metabolomics/dimspy + +PyPI (The Python Package Index): https://pypi.org/project/dimspy + + +Version +-------- +v1.4.0+Galaxy0 (`DIMSpy v1.4.0 <https://pypi.org/project/dimspy/1.4.0/>`_) + + +Galaxy +------- +`Galaxy <https://galaxyproject.org>`_ is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. + + +Authors, contributors & Contacts +---------------------------------- + - Ralf J. M. Weber (r.j.weber@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`_ + - Thomas N. Lawson (tnl495@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`_ + - Martin R. Jones (m.r.jones.1@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`_ + + +Bugs +---- +Please report any bugs that you find `here <https://github.com/computational-metabolomics/dimspy-galaxy/issues>`_. +Or fork the repository on `GitHub <https://github.com/computational-metabolomics/dimspy-galaxy/>`_ +and create a pull request (PR). We welcome all contributions, and we +will help you to make the PR if you are new to `git`. + + +Changes +------- +v1.4.0+galaxy0 + - First stable release + - Final release (Python 2-based version `DIMSpy <https://pypi.org/project/dimspy/1.4.0/>`_) + + +Licenses +------- +DIMSpy and Galaxy tools are released under the GNU General Public License v3.0 (see `LICENSE file <https://github.com/computational-metabolomics/dimspy-galaxy/blob/master/LICENSE>`_) + +**Third-party licenses and copyright** + +RawFileReader reading tool. Copyright © 2016 by Thermo Fisher Scientific, Inc. All rights reserved. See `RawFileReaderLicense <https://github.com/computational-metabolomics/dimspy/blob/master/RawFileReaderLicense.rst>`_ for licensing information. +Using DIMSpy software for processing Thermo Fisher Scientific *.raw files implies the acceptance of the RawFileReader license terms. +Anyone receiving RawFileReader as part of a larger software distribution (in the current context, as part of DIMSpy) is considered an "end user" under +section 3.3 of the RawFileReader License, and is not granted rights to redistribute RawFileReader. + + +.. |Build Status (Travis)| image:: https://img.shields.io/travis/computational-metabolomics/dimspy-galaxy.svg?style=flat&maxAge=3600&label=Travis-CI + :target: https://travis-ci.com/computational-metabolomics/dimspy-galaxy + +.. |Git| image:: https://img.shields.io/badge/repository-GitHub-blue.svg?style=flat&maxAge=3600 + :target: https://github.com/computational-metabolomics/dimspy + +.. |Bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat&maxAge=3600 + :target: http://bioconda.github.io/recipes/dimspy/README.html + +.. |License| image:: https://img.shields.io/badge/License-GPL%20v3-blue.svg + :target: https://www.gnu.org/licenses/gpl-3.0.html