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comparison replicate_filter.xml @ 2:6cb796aa12c8 draft default tip

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"planemo upload for repository https://github.com/computational-metabolomics/dimspy-galaxy commit 80069808371b58f45da0c8133c27d67ac1a5b448"
author computational-metabolomics
date Wed, 17 Feb 2021 10:54:32 +0000
parents 0cdf340364ed
children
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1:0cdf340364ed 2:6cb796aa12c8
1 <tool id="dimspy_replicate_filter" name="Replicate Filter" version="@TOOL_VERSION@+galaxy@GALAXY_TOOL_VERSION@"> 1 <tool id="dimspy_replicate_filter" name="Replicate Filter" version="@TOOL_VERSION@+galaxy1">
2 <description> - Remove peaks that fail to appear in at least x-out-of-n (technical) replicates</description> 2 <description> - Remove peaks that fail to appear in at least x-out-of-n (technical) replicates</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
17 --min-peak-present $min_peaks 17 --min-peak-present $min_peaks
18 #if $rsd_threshold 18 #if $rsd_threshold
19 --rsd-threshold $rsd_threshold 19 --rsd-threshold $rsd_threshold
20 #end if 20 #end if
21 --report '$report' 21 --report '$report'
22 --ncpu \${GALAXY_SLOTS:-1}
22 && 23 &&
23 dimspy create-sample-list 24 dimspy create-sample-list
24 --input '$hdf5_file_out' 25 --input '$hdf5_file_out'
25 --output '$samplelist' 26 --output '$samplelist'
26 --delimiter tab 27 --delimiter tab