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comparison filterFragSpectra.xml @ 7:2e10c13085c9 draft default tip

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"planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit e3b17490a958d80ebe78ef1bebebef48948e1240"
author computational-metabolomics
date Tue, 08 Feb 2022 14:02:03 +0000
parents 96af79da0cc6
children
comparison
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6:cc0f8ddad4a8 7:2e10c13085c9
16 --plim=$plim 16 --plim=$plim
17 --ra=$ra 17 --ra=$ra
18 --snr=$snr 18 --snr=$snr
19 --snmeth=$snmeth 19 --snmeth=$snmeth
20 $rmp 20 $rmp
21 $allfrag
21 ]]></command> 22 ]]></command>
22 <inputs> 23 <inputs>
23 <param argument="--pa" type="data" 24 <param argument="--pa" type="data"
24 label="purityA object with fragmentation linked to XCMS features" format="rdata" 25 label="purityA object with fragmentation linked to XCMS features" format="rdata"
25 help="purityA object saved as 'pa' in a RData file where fragmentation has 26 help="purityA object saved as 'pa' in a RData file where fragmentation has
37 <!-- <option value="mad">mad</option> --> 38 <!-- <option value="mad">mad</option> -->
38 </param> 39 </param>
39 <param argument="--rmp" type="boolean" checked="false" truevalue="--rmp" falsevalue="" 40 <param argument="--rmp" type="boolean" checked="false" truevalue="--rmp" falsevalue=""
40 label="Remove peaks that do not meet the filtering criteria. 41 label="Remove peaks that do not meet the filtering criteria.
41 Otherwise peaks will be flagged instead." 42 Otherwise peaks will be flagged instead."
43 help="" />
44 <param argument="--allfrag" type="boolean" checked="false" truevalue="--allfrag" falsevalue=""
45 label="Perform filtering on all fragmentation spectra (not just those aligned to XCMS features)"
42 help="" /> 46 help="" />
43 </inputs> 47 </inputs>
44 <outputs> 48 <outputs>
45 <data name="filterFragSpectra_output_rdata" format="rdata" 49 <data name="filterFragSpectra_output_rdata" format="rdata"
46 label="${tool.name} on ${on_string}: RData" /> 50 label="${tool.name} on ${on_string}: RData" />