Mercurial > repos > computational-metabolomics > mspurity_filterfragspectra

diff filterFragSpectra.xml @ 7:2e10c13085c9 draft default tip

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"planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit e3b17490a958d80ebe78ef1bebebef48948e1240"
author computational-metabolomics
date Tue, 08 Feb 2022 14:02:03 +0000
parents 96af79da0cc6
children
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--- a/filterFragSpectra.xml	Thu Mar 04 12:28:18 2021 +0000
+++ b/filterFragSpectra.xml	Tue Feb 08 14:02:03 2022 +0000
@@ -18,6 +18,7 @@
             --snr=$snr
             --snmeth=$snmeth
             $rmp
+            $allfrag
     ]]></command>
     <inputs>
         <param argument="--pa" type="data"
@@ -40,6 +41,9 @@
                label="Remove peaks that do not meet the filtering criteria.
                       Otherwise peaks will be flagged instead."
                help="" />
+        <param argument="--allfrag" type="boolean" checked="false" truevalue="--allfrag" falsevalue=""
+               label="Perform filtering on all fragmentation spectra (not just those aligned to XCMS features)"
+               help="" />
     </inputs>
     <outputs>
         <data name="filterFragSpectra_output_rdata" format="rdata"