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comparison cpt_gbk_to_5col/macros.xml @ 0:66143811fe8a draft

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author cpt
date Fri, 17 Jun 2022 12:45:08 +0000
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1 <?xml version="1.0"?>
2 <macros>
3 <xml name="requirements">
4 <requirements>
5 <requirement type="package" version="3.8.13">python</requirement>
6 <requirement type="package" version="1.79">biopython</requirement>
7 <requirement type="package" version="1.2.2">cpt_gffparser</requirement>
8 <yield/>
9 </requirements>
10 </xml>
11 <xml name="ldap_ref"
12 token_name="dn_ref"
13 token_label="Pick a DN"
14 token_fromfile="ldap_people.loc">
15 <repeat name="repeat_@NAME@" title="@LABEL@">
16 <param name="@NAME@" label="Select a @LABEL@" type="select">
17 <options from_file="@FROMFILE@">
18 <column name="name" index="0"/>
19 <column name="value" index="1"/>
20 </options>
21 </param>
22 </repeat>
23 </xml>
24 <xml name="ldap_ref_single"
25 token_name="dn_ref"
26 token_label="Pick a DN"
27 token_fromfile="ldap_people.loc">
28 <param name="@NAME@" label="Select a @LABEL@" type="select">
29 <options from_file="@FROMFILE@">
30 <column name="name" index="0"/>
31 <column name="value" index="1"/>
32 </options>
33 </param>
34 </xml>
35 <xml name="gbk_feature_type"
36 token_label="Feature type to remove"
37 token_multiple="True"
38 token_optional="False"
39 token_name="positional_2">
40 <param label="@LABEL@" optional="@TOKEN_OPTIONAL" multiple="@MULTIPLE@" name="feature_type" type="select">
41 <option value="-10_signal">-10_signal</option>
42 <option value="-35_signal">-35_signal</option>
43 <option value="3'UTR">3'UTR</option>
44 <option value="5'UTR">5'UTR</option>
45 <option value="CAAT_signal">CAAT_signal</option>
46 <option selected="true" value="CDS">CDS</option>
47 <option value="C_region">C_region</option>
48 <option value="D-loop">D-loop</option>
49 <option value="D_segment">D_segment</option>
50 <option value="GC_signal">GC_signal</option>
51 <option value="J_segment">J_segment</option>
52 <option value="LTR">LTR</option>
53 <option value="N_region">N_region</option>
54 <option value="RBS">RBS</option>
55 <option value="STS">STS</option>
56 <option value="S_region">S_region</option>
57 <option value="TATA_signal">TATA_signal</option>
58 <option value="V_region">V_region</option>
59 <option value="V_segment">V_segment</option>
60 <option value="all">all</option>
61 <option value="assembly_gap">assembly_gap</option>
62 <option value="attenuator">attenuator</option>
63 <option value="enhancer">enhancer</option>
64 <option value="exon">exon</option>
65 <option value="gap">gap</option>
66 <option value="gene">gene</option>
67 <option value="iDNA">iDNA</option>
68 <option value="intron">intron</option>
69 <option value="mRNA">mRNA</option>
70 <option value="mat_peptide">mat_peptide</option>
71 <option value="misc_RNA">misc_RNA</option>
72 <option value="misc_binding">misc_binding</option>
73 <option value="misc_difference">misc_difference</option>
74 <option value="misc_feature">misc_feature</option>
75 <option value="misc_recomb">misc_recomb</option>
76 <option value="misc_signal">misc_signal</option>
77 <option value="misc_structure">misc_structure</option>
78 <option value="mobile_element">mobile_element</option>
79 <option value="modified_base">modified_base</option>
80 <option value="ncRNA">ncRNA</option>
81 <option value="old_sequence">old_sequence</option>
82 <option value="operon">operon</option>
83 <option value="oriT">oriT</option>
84 <option value="polyA_signal">polyA_signal</option>
85 <option value="polyA_site">polyA_site</option>
86 <option value="precursor_RNA">precursor_RNA</option>
87 <option value="prim_transcript">prim_transcript</option>
88 <option value="primer_bind">primer_bind</option>
89 <option value="promoter">promoter</option>
90 <option value="protein_bind">protein_bind</option>
91 <option value="rRNA">rRNA</option>
92 <option value="rep_origin">rep_origin</option>
93 <option value="repeat_region">repeat_region</option>
94 <option value="sig_peptide">sig_peptide</option>
95 <option value="source">source</option>
96 <option value="stem_loop">stem_loop</option>
97 <option value="tRNA">tRNA</option>
98 <option value="terminator">terminator</option>
99 <option value="tmRNA">tmRNA</option>
100 <option value="transit_peptide">transit_peptide</option>
101 <option value="unsure">unsure</option>
102 <option value="variation">variation</option>
103 </param>
104 </xml>
105 </macros>