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1 <?xml version="1.0"?>
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2 <macros>
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3 <xml name="requirements">
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4 <requirements>
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5 <requirement type="package" version="3.8.13">python</requirement>
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6 <requirement type="package" version="1.79">biopython</requirement>
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7 <requirement type="package" version="1.2.2">cpt_gffparser</requirement>
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8 <yield/>
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9 </requirements>
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10 </xml>
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11 <xml name="ldap_ref"
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12 token_name="dn_ref"
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13 token_label="Pick a DN"
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14 token_fromfile="ldap_people.loc">
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15 <repeat name="repeat_@NAME@" title="@LABEL@">
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16 <param name="@NAME@" label="Select a @LABEL@" type="select">
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17 <options from_file="@FROMFILE@">
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18 <column name="name" index="0"/>
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19 <column name="value" index="1"/>
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20 </options>
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21 </param>
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22 </repeat>
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23 </xml>
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24 <xml name="ldap_ref_single"
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25 token_name="dn_ref"
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26 token_label="Pick a DN"
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27 token_fromfile="ldap_people.loc">
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28 <param name="@NAME@" label="Select a @LABEL@" type="select">
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29 <options from_file="@FROMFILE@">
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30 <column name="name" index="0"/>
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31 <column name="value" index="1"/>
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32 </options>
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33 </param>
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34 </xml>
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35 <xml name="gbk_feature_type"
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36 token_label="Feature type to remove"
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37 token_multiple="True"
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38 token_optional="False"
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39 token_name="positional_2">
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40 <param label="@LABEL@" optional="@TOKEN_OPTIONAL" multiple="@MULTIPLE@" name="feature_type" type="select">
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41 <option value="-10_signal">-10_signal</option>
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42 <option value="-35_signal">-35_signal</option>
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43 <option value="3'UTR">3'UTR</option>
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44 <option value="5'UTR">5'UTR</option>
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45 <option value="CAAT_signal">CAAT_signal</option>
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46 <option selected="true" value="CDS">CDS</option>
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47 <option value="C_region">C_region</option>
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48 <option value="D-loop">D-loop</option>
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49 <option value="D_segment">D_segment</option>
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50 <option value="GC_signal">GC_signal</option>
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51 <option value="J_segment">J_segment</option>
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52 <option value="LTR">LTR</option>
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53 <option value="N_region">N_region</option>
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54 <option value="RBS">RBS</option>
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55 <option value="STS">STS</option>
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56 <option value="S_region">S_region</option>
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57 <option value="TATA_signal">TATA_signal</option>
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58 <option value="V_region">V_region</option>
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59 <option value="V_segment">V_segment</option>
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60 <option value="all">all</option>
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61 <option value="assembly_gap">assembly_gap</option>
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62 <option value="attenuator">attenuator</option>
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63 <option value="enhancer">enhancer</option>
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64 <option value="exon">exon</option>
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65 <option value="gap">gap</option>
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66 <option value="gene">gene</option>
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67 <option value="iDNA">iDNA</option>
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68 <option value="intron">intron</option>
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69 <option value="mRNA">mRNA</option>
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70 <option value="mat_peptide">mat_peptide</option>
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71 <option value="misc_RNA">misc_RNA</option>
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72 <option value="misc_binding">misc_binding</option>
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73 <option value="misc_difference">misc_difference</option>
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74 <option value="misc_feature">misc_feature</option>
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75 <option value="misc_recomb">misc_recomb</option>
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76 <option value="misc_signal">misc_signal</option>
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77 <option value="misc_structure">misc_structure</option>
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78 <option value="mobile_element">mobile_element</option>
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79 <option value="modified_base">modified_base</option>
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80 <option value="ncRNA">ncRNA</option>
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81 <option value="old_sequence">old_sequence</option>
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82 <option value="operon">operon</option>
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83 <option value="oriT">oriT</option>
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84 <option value="polyA_signal">polyA_signal</option>
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85 <option value="polyA_site">polyA_site</option>
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86 <option value="precursor_RNA">precursor_RNA</option>
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87 <option value="prim_transcript">prim_transcript</option>
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88 <option value="primer_bind">primer_bind</option>
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89 <option value="promoter">promoter</option>
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90 <option value="protein_bind">protein_bind</option>
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91 <option value="rRNA">rRNA</option>
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92 <option value="rep_origin">rep_origin</option>
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93 <option value="repeat_region">repeat_region</option>
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94 <option value="sig_peptide">sig_peptide</option>
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95 <option value="source">source</option>
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96 <option value="stem_loop">stem_loop</option>
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97 <option value="tRNA">tRNA</option>
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98 <option value="terminator">terminator</option>
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99 <option value="tmRNA">tmRNA</option>
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100 <option value="transit_peptide">transit_peptide</option>
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101 <option value="unsure">unsure</option>
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102 <option value="variation">variation</option>
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103 </param>
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104 </xml>
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105 </macros>
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