Mercurial > repos > cpt > cpt_gbk_to_5col
diff test-data/complex_feature_locs.gbk @ 1:1bdd481d5c25 draft
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
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date | Mon, 05 Jun 2023 02:42:57 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/complex_feature_locs.gbk Mon Jun 05 02:42:57 2023 +0000 @@ -0,0 +1,38 @@ +LOCUS contig00077 300 bp DNA linear 15-MAR-2010 +DEFINITION '[length=22956]' '[numreads=4517 from AU1189;454 Data]'. +ACCESSION +VERSION +KEYWORDS . +SOURCE AU1189 + ORGANISM AU1189 + Unclassified. +REFERENCE 1 (bases 1 to 22956) + AUTHORS Duarte,I. + TITLE contig77 + JOURNAL Unpublished +REFERENCE 2 (bases 1 to 22956) + AUTHORS Duarte,I. + TITLE Direct Submission + JOURNAL Submitted (15-MAR-2010) PLPM, Texas A&M University, 2132 TAMU, + College Station, TX 77840, USA +FEATURES Location/Qualifiers + source 1..22956 + /organism="AU1189" + /mol_type="genomic DNA" + CDS complement(join(11159..11327,11327..11652)) + /note="tapemeasure frameshift chaperone" + /product="P2 E' tapemeasure frameshift chaperone" + /translation="MNPIQSDAAAPDLQADAAAIATPAQDDPATHTLDTPLVRGTQTITSITLRKPKSGELRGV + SLSDLVSLDVVALSKVLPRISSPMLTEADVASIDPADLVQLGGIFAGFFDAEGREIPTGL + PDRVEDPMADIATVFGWTPPVMDAFSLAELMDWRERARVRAGAQ" + /gene="gp14" + CDS complement(join(11409..11600,11600..11900)) + RBS complement(11905..11910) +BASE COUNT 3240 a 7606 c 8254 g 3856 t +ORIGIN + 1 agccgggcgc gccaagcctg atcaggctct cagcggtttc ctcccatcgt cgtgcagtac + 61 cgttgcagct aaattgcagc cggaatcggc gcgggctcgg ccgtcagcgg cgcgacccat + 121 tgcgccagat gcgcggccga cagatgcgcg taccgctgca ccatttccat cgtctcccag + 181 ccgcccagct ccttcagcac ctgcagcggc gtgccgcgtt ggacgtgcca gctcgcccag + 241 gtgtggcgca ggtcgtgcca gcggaaatcg tgcaggccgg cgcgccgcag cgccttggcc +//