Mercurial > repos > cpt > cpt_gff_add_parents
changeset 0:60651e90119a draft
Uploaded
| author | cpt |
|---|---|
| date | Fri, 13 May 2022 04:54:17 +0000 |
| parents | |
| children | 5b2daedf156f |
| files | cpt_gff_add_parent/cpt-macros.xml cpt_gff_add_parent/gff3.py cpt_gff_add_parent/gff3_add_parents_to_cds.py cpt_gff_add_parent/gff3_add_parents_to_cds.xml cpt_gff_add_parent/macros.xml cpt_gff_add_parent/test-data/Miro_AddParentIn.gff3 cpt_gff_add_parent/test-data/T7_AddParentIn.gff3 |
| diffstat | 7 files changed, 4842 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cpt_gff_add_parent/cpt-macros.xml Fri May 13 04:54:17 2022 +0000 @@ -0,0 +1,115 @@ +<?xml version="1.0"?> +<macros> + <xml name="gff_requirements"> + <requirements> + <requirement type="package" version="2.7">python</requirement> + <requirement type="package" version="1.65">biopython</requirement> + <requirement type="package" version="2.12.1">requests</requirement> + <yield/> + </requirements> + <version_command> + <![CDATA[ + cd $__tool_directory__ && git rev-parse HEAD + ]]> + </version_command> + </xml> + <xml name="citation/mijalisrasche"> + <citation type="doi">10.1371/journal.pcbi.1008214</citation> + <citation type="bibtex">@unpublished{galaxyTools, + author = {E. Mijalis, H. Rasche}, + title = {CPT Galaxy Tools}, + year = {2013-2017}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1371/journal.pcbi.1008214</citation> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {E. Mijalis, H. Rasche}, + title = {CPT Galaxy Tools}, + year = {2013-2017}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <yield/> + </citations> + </xml> + <xml name="citations-crr"> + <citations> + <citation type="doi">10.1371/journal.pcbi.1008214</citation> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {C. Ross}, + title = {CPT Galaxy Tools}, + year = {2020-}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <yield/> + </citations> + </xml> + <xml name="citations-2020"> + <citations> + <citation type="doi">10.1371/journal.pcbi.1008214</citation> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {E. Mijalis, H. Rasche}, + title = {CPT Galaxy Tools}, + year = {2013-2017}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {A. Criscione}, + title = {CPT Galaxy Tools}, + year = {2019-2021}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <yield/> + </citations> + </xml> + <xml name="citations-2020-AJC-solo"> + <citations> + <citation type="doi">10.1371/journal.pcbi.1008214</citation> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {A. Criscione}, + title = {CPT Galaxy Tools}, + year = {2019-2021}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <yield/> + </citations> + </xml> + <xml name="citations-clm"> + <citations> + <citation type="doi">10.1371/journal.pcbi.1008214</citation> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {C. Maughmer}, + title = {CPT Galaxy Tools}, + year = {2017-2020}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <yield/> + </citations> + </xml> + <xml name="sl-citations-clm"> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {C. Maughmer}, + title = {CPT Galaxy Tools}, + year = {2017-2020}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <yield/> + </xml> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cpt_gff_add_parent/gff3.py Fri May 13 04:54:17 2022 +0000 @@ -0,0 +1,346 @@ +import copy +import logging + +log = logging.getLogger() +log.setLevel(logging.WARN) + + +def feature_lambda( + feature_list, + test, + test_kwargs, + subfeatures=True, + parent=None, + invert=False, + recurse=True, +): + """Recursively search through features, testing each with a test function, yielding matches. + + GFF3 is a hierachical data structure, so we need to be able to recursively + search through features. E.g. if you're looking for a feature with + ID='bob.42', you can't just do a simple list comprehension with a test + case. You don't know how deeply burried bob.42 will be in the feature tree. This is where feature_lambda steps in. + + :type feature_list: list + :param feature_list: an iterable of features + + :type test: function reference + :param test: a closure with the method signature (feature, **kwargs) where + the kwargs are those passed in the next argument. This + function should return True or False, True if the feature is + to be yielded as part of the main feature_lambda function, or + False if it is to be ignored. This function CAN mutate the + features passed to it (think "apply"). + + :type test_kwargs: dictionary + :param test_kwargs: kwargs to pass to your closure when it is called. + + :type subfeatures: boolean + :param subfeatures: when a feature is matched, should just that feature be + yielded to the caller, or should the entire sub_feature + tree for that feature be included? subfeatures=True is + useful in cases such as searching for a gene feature, + and wanting to know what RBS/Shine_Dalgarno_sequences + are in the sub_feature tree (which can be accomplished + with two feature_lambda calls). subfeatures=False is + useful in cases when you want to process (and possibly + return) the entire feature tree, such as applying a + qualifier to every single feature. + + :type invert: boolean + :param invert: Negate/invert the result of the filter. + + :rtype: yielded list + :return: Yields a list of matching features. + """ + # Either the top level set of [features] or the subfeature attribute + for feature in feature_list: + feature._parent = parent + if not parent: + # Set to self so we cannot go above root. + feature._parent = feature + test_result = test(feature, **test_kwargs) + # if (not invert and test_result) or (invert and not test_result): + if invert ^ test_result: + if not subfeatures: + feature_copy = copy.deepcopy(feature) + feature_copy.sub_features = list() + yield feature_copy + else: + yield feature + + if recurse and hasattr(feature, "sub_features"): + for x in feature_lambda( + feature.sub_features, + test, + test_kwargs, + subfeatures=subfeatures, + parent=feature, + invert=invert, + recurse=recurse, + ): + yield x + + +def fetchParent(feature): + if not hasattr(feature, "_parent") or feature._parent is None: + return feature + else: + return fetchParent(feature._parent) + + +def feature_test_true(feature, **kwargs): + return True + + +def feature_test_type(feature, **kwargs): + if "type" in kwargs: + return str(feature.type).upper() == str(kwargs["type"]).upper() + elif "types" in kwargs: + for x in kwargs["types"]: + if str(feature.type).upper() == str(x).upper(): + return True + return False + raise Exception("Incorrect feature_test_type call, need type or types") + + +def feature_test_qual_value(feature, **kwargs): + """Test qualifier values. + + For every feature, check that at least one value in + feature.quailfiers(kwargs['qualifier']) is in kwargs['attribute_list'] + """ + if isinstance(kwargs["qualifier"], list): + for qualifier in kwargs["qualifier"]: + for attribute_value in feature.qualifiers.get(qualifier, []): + if attribute_value in kwargs["attribute_list"]: + return True + else: + for attribute_value in feature.qualifiers.get(kwargs["qualifier"], []): + if attribute_value in kwargs["attribute_list"]: + return True + return False + + +def feature_test_location(feature, **kwargs): + if "strand" in kwargs: + if feature.location.strand != kwargs["strand"]: + return False + + return feature.location.start <= kwargs["loc"] <= feature.location.end + + +def feature_test_quals(feature, **kwargs): + """ + Example:: + + a = Feature(qualifiers={'Note': ['Some notes', 'Aasdf']}) + + # Check if a contains a Note + feature_test_quals(a, {'Note': None}) # Returns True + feature_test_quals(a, {'Product': None}) # Returns False + + # Check if a contains a note with specific value + feature_test_quals(a, {'Note': ['ome']}) # Returns True + + # Check if a contains a note with specific value + feature_test_quals(a, {'Note': ['other']}) # Returns False + """ + for key in kwargs: + if key not in feature.qualifiers: + return False + + # Key is present, no value specified + if kwargs[key] is None: + return True + + # Otherwise there is a key value we're looking for. + # so we make a list of matches + matches = [] + # And check all of the feature qualifier valuse + for value in feature.qualifiers[key]: + # For that kwargs[key] value + for x in kwargs[key]: + matches.append(x in value) + + # If none matched, then we return false. + if not any(matches): + return False + + return True + + +def feature_test_contains(feature, **kwargs): + if "index" in kwargs: + return feature.location.start < kwargs["index"] < feature.location.end + elif "range" in kwargs: + return ( + feature.location.start < kwargs["range"]["start"] < feature.location.end + and feature.location.start < kwargs["range"]["end"] < feature.location.end + ) + else: + raise RuntimeError("Must use index or range keyword") + + +def get_id(feature=None, parent_prefix=None): + result = "" + if parent_prefix is not None: + result += parent_prefix + "|" + if "locus_tag" in feature.qualifiers: + result += feature.qualifiers["locus_tag"][0] + elif "gene" in feature.qualifiers: + result += feature.qualifiers["gene"][0] + elif "Gene" in feature.qualifiers: + result += feature.qualifiers["Gene"][0] + elif "product" in feature.qualifiers: + result += feature.qualifiers["product"][0] + elif "Product" in feature.qualifiers: + result += feature.qualifiers["Product"][0] + elif "Name" in feature.qualifiers: + result += feature.qualifiers["Name"][0] + else: + return feature.id + # Leaving in case bad things happen. + # result += '%s_%s_%s_%s' % ( + # feature.id, + # feature.location.start, + # feature.location.end, + # feature.location.strand + # ) + return result + + +def get_gff3_id(gene): + return gene.qualifiers.get("Name", [gene.id])[0] + + +def ensure_location_in_bounds(start=0, end=0, parent_length=0): + # This prevents frameshift errors + while start < 0: + start += 3 + while end < 0: + end += 3 + while start > parent_length: + start -= 3 + while end > parent_length: + end -= 3 + return (start, end) + + +def coding_genes(feature_list): + for x in genes(feature_list): + if ( + len( + list( + feature_lambda( + x.sub_features, + feature_test_type, + {"type": "CDS"}, + subfeatures=False, + ) + ) + ) + > 0 + ): + yield x + + +def genes(feature_list, feature_type="gene", sort=False): + """ + Simple filter to extract gene features from the feature set. + """ + + if not sort: + for x in feature_lambda( + feature_list, feature_test_type, {"type": feature_type}, subfeatures=True + ): + yield x + else: + data = list(genes(feature_list, feature_type=feature_type, sort=False)) + data = sorted(data, key=lambda feature: feature.location.start) + for x in data: + yield x + + +def wa_unified_product_name(feature): + """ + Try and figure out a name. We gave conflicting instructions, so + this isn't as trivial as it should be. Sometimes it will be in + 'product' or 'Product', othertimes in 'Name' + """ + # Manually applied tags. + protein_product = feature.qualifiers.get( + "product", feature.qualifiers.get("Product", [None]) + )[0] + + # If neither of those are available ... + if protein_product is None: + # And there's a name... + if "Name" in feature.qualifiers: + if not is_uuid(feature.qualifiers["Name"][0]): + protein_product = feature.qualifiers["Name"][0] + + return protein_product + + +def is_uuid(name): + return name.count("-") == 4 and len(name) == 36 + + +def get_rbs_from(gene): + # Normal RBS annotation types + rbs_rbs = list( + feature_lambda( + gene.sub_features, feature_test_type, {"type": "RBS"}, subfeatures=False + ) + ) + rbs_sds = list( + feature_lambda( + gene.sub_features, + feature_test_type, + {"type": "Shine_Dalgarno_sequence"}, + subfeatures=False, + ) + ) + # Fraking apollo + apollo_exons = list( + feature_lambda( + gene.sub_features, feature_test_type, {"type": "exon"}, subfeatures=False + ) + ) + apollo_exons = [x for x in apollo_exons if len(x) < 10] + # These are more NCBI's style + regulatory_elements = list( + feature_lambda( + gene.sub_features, + feature_test_type, + {"type": "regulatory"}, + subfeatures=False, + ) + ) + rbs_regulatory = list( + feature_lambda( + regulatory_elements, + feature_test_quals, + {"regulatory_class": ["ribosome_binding_site"]}, + subfeatures=False, + ) + ) + # Here's hoping you find just one ;) + return rbs_rbs + rbs_sds + rbs_regulatory + apollo_exons + + +def nice_name(record): + """ + get the real name rather than NCBI IDs and so on. If fails, will return record.id + """ + name = record.id + likely_parental_contig = list(genes(record.features, feature_type="contig")) + if len(likely_parental_contig) == 1: + name = likely_parental_contig[0].qualifiers.get("organism", [name])[0] + return name + + +def fsort(it): + for i in sorted(it, key=lambda x: int(x.location.start)): + yield i
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cpt_gff_add_parent/gff3_add_parents_to_cds.py Fri May 13 04:54:17 2022 +0000 @@ -0,0 +1,50 @@ +#!/usr/bin/env python +import sys +import logging +import argparse +from CPT_GFFParser import gffParse, gffWrite, gffSeqFeature +#from Bio.SeqFeature import SeqFeature +from gff3 import feature_lambda, feature_test_type + +logging.basicConfig(level=logging.INFO) +log = logging.getLogger(__name__) + + +def fixed_feature(rec): + for feature in feature_lambda( + rec.features, feature_test_type, {"type": "CDS"}, subfeatures=True + ): + import random + + fid = feature.qualifiers["ID"][0] + "_" + str(random.random()) + gene = gffSeqFeature( + location=feature.location, + type="gene", + qualifiers={"ID": [fid], "source": ["cpt.fixModel"]}, + ) + # Below that we have an mRNA + mRNA = gffSeqFeature( + location=feature.location, + type="mRNA", + qualifiers={"source": ["cpt.fixModel"], "ID": ["%s.mRNA" % fid], "Parent": gene.qualifiers["ID"]}, + ) + feature.qualifiers["ID"] = [fid + ".CDS"] + feature.qualifiers["Parent"] = mRNA.qualifiers["ID"] + + mRNA.sub_features = [feature] + gene.sub_features = [mRNA] + yield gene + + +def gff_filter(gff3): + for rec in gffParse(gff3): + rec.features = sorted(list(fixed_feature(rec)), key=lambda x: x.location.start) + rec.annotations = {} + gffWrite([rec], sys.stdout) + + +if __name__ == "__main__": + parser = argparse.ArgumentParser(description="add parent gene features to CDSs") + parser.add_argument("gff3", type=argparse.FileType("r"), help="GFF3 annotations") + args = parser.parse_args() + gff_filter(**vars(args))
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cpt_gff_add_parent/gff3_add_parents_to_cds.xml Fri May 13 04:54:17 2022 +0000 @@ -0,0 +1,50 @@ +<?xml version="1.0"?> +<tool id="edu.tamu.cpt.gff3.cdsParents" name="GFF3 Add Gene to CDS" version="19.1.0.0"> + <description>is one step of fixing a gene model--adding parent gene features to CDSs</description> + <macros> + <import>macros.xml</import> + <import>cpt-macros.xml</import> + </macros> + <expand macro="requirements"/> + <command detect_errors="aggressive"><![CDATA[ +$__tool_directory__/gff3_add_parents_to_cds.py +@INPUT_GFF@ +> $output]]></command> + <inputs> + <expand macro="gff3_input" /> + </inputs> + <outputs> + <data format="gff3" name="output"/> + </outputs> + <tests> + <test> + <param name="gff3_data" value="T7_AddParentIn.gff3" /> + <output name="output"> + <assert_contents> + <has_line line="##gff-version 3"/> + <has_n_lines n="10105" /> + </assert_contents> + </output> + </test> + <test> + <param name="gff3_data" value="Miro_AddParentIn.gff3" /> + <output name="output"> + <assert_contents> + <has_line line="##gff-version 3"/> + <has_n_lines n="829" /> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[ +**What it does** + +This tool updates the gene model in a GFF3, useful when a nonstandard gene model +has been applied. It finds all CDS features, **strips their parent features**, +then applies a gene-mRNA-CDS model, compliant with the standard GFF3 format. + +Warning: Use this tool only when it is absolutely necessary to fix a gene model. + + ]]></help> + <expand macro="citations" /> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cpt_gff_add_parent/macros.xml Fri May 13 04:54:17 2022 +0000 @@ -0,0 +1,85 @@ +<?xml version="1.0"?> +<macros> + <xml name="requirements"> + <requirements> + <requirement type="package" version="3.6">python</requirement> + <requirement type="package" version="1.77">biopython</requirement> + <requirement type="package" version="1.1.3">cpt_gffparser</requirement> + <yield/> + </requirements> + </xml> + <token name="@BLAST_TSV@"> + "$blast_tsv" + </token> + <xml name="blast_tsv"> + <param label="Blast Results" help="TSV/tabular (25 Column)" + name="blast_tsv" type="data" format="tabular" /> + </xml> + + <token name="@BLAST_XML@"> + "$blast_xml" + </token> + <xml name="blast_xml"> + <param label="Blast Results" help="XML format" + name="blast_xml" type="data" format="blastxml" /> + </xml> + <xml name="gff3_with_fasta"> + <param label="Genome Sequences" name="fasta" type="data" format="fasta" /> + <param label="Genome Annotations" name="gff3" type="data" format="gff3" /> + </xml> + <xml name="genome_selector"> + <conditional name="reference_genome"> + <param name="reference_genome_source" type="select" label="Reference Genome"> + <option value="history" selected="True">From History</option> + <option value="cached">Locally Cached</option> + </param> + <when value="cached"> + <param name="fasta_indexes" type="select" label="Source FASTA Sequence"> + <options from_data_table="all_fasta"/> + </param> + </when> + <when value="history"> + <param name="genome_fasta" type="data" format="fasta" label="Source FASTA Sequence"/> + </when> + </conditional> + </xml> + <xml name="gff3_input"> + <param label="GFF3 Annotations" name="gff3_data" type="data" format="gff3"/> + </xml> + <xml name="input/gff3+fasta"> + <expand macro="gff3_input" /> + <expand macro="genome_selector" /> + </xml> + <token name="@INPUT_GFF@"> + "$gff3_data" + </token> + <token name="@INPUT_FASTA@"> +#if str($reference_genome.reference_genome_source) == 'cached': + "${reference_genome.fasta_indexes.fields.path}" +#else if str($reference_genome.reference_genome_source) == 'history': + genomeref.fa +#end if + </token> + <token name="@GENOME_SELECTOR_PRE@"> +#if $reference_genome.reference_genome_source == 'history': + ln -s $reference_genome.genome_fasta genomeref.fa; +#end if + </token> + <token name="@GENOME_SELECTOR@"> +#if str($reference_genome.reference_genome_source) == 'cached': + "${reference_genome.fasta_indexes.fields.path}" +#else if str($reference_genome.reference_genome_source) == 'history': + genomeref.fa +#end if + </token> + <xml name="input/fasta"> + <param label="Fasta file" name="sequences" type="data" format="fasta"/> + </xml> + + <token name="@SEQUENCE@"> + "$sequences" + </token> + <xml name="input/fasta/protein"> + <param label="Protein fasta file" name="sequences" type="data" format="fasta"/> + </xml> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cpt_gff_add_parent/test-data/Miro_AddParentIn.gff3 Fri May 13 04:54:17 2022 +0000 @@ -0,0 +1,827 @@ +##gff-version 3 +##sequence-region Miro 1 176055 +Miro feature gene 7454 7906 . - . ID=Miro_8 +Miro GenBank CDS 7454 7894 . - 1 ID=Miro_8.CDS;Name=Miro_8;Parent=Miro_8;obsolete_name=Miro_156;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 7903 7906 . - 1 Alias=Miro_8;ID=Miro_8.RBS;Name=Miro_8;Parent=Miro_8 +Miro feature gene 7917 8512 . - . ID=Miro_9 +Miro GenBank CDS 7917 8501 . - 1 ID=Miro_9.CDS;Name=Miro_9;Parent=Miro_9;obsolete_name=Miro_155;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 8509 8512 . - 1 Alias=Miro_9;ID=Miro_9.RBS;Name=Miro_9;Parent=Miro_9 +Miro feature gene 123276 124212 . + . ID=Miro_206 +Miro GenBank CDS 123286 124212 . + 1 Alias=Miro_206;ID=Miro_206.CDS;Name=Miro_206;Parent=Miro_206;obsolete_name=Miro_234;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 123276 123279 . + 1 ID=Miro_206.rbs;Name=Miro_206;Parent=Miro_206 +Miro feature gene 68490 70715 . - . ID=Miro_117 +Miro GenBank CDS 68490 70706 . - 1 ID=Miro_117.CDS;Name=Miro_117;Note=contains von Willebrand factor%2C type A;Parent=Miro_117;obsolete_name=Miro_047;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 70713 70715 . - 1 Alias=Miro_117;ID=Miro_117.RBS;Name=Miro_117;Parent=Miro_117 +Miro feature gene 115729 116735 . + . ID=Miro_200 +Miro GenBank CDS 115743 116735 . + 1 Alias=Miro_200;ID=Miro_200.CDS;Name=Miro_200;Note=T4 gp6-like;Parent=Miro_200;obsolete_name=Miro_240;product=baseplate structural protein +Miro GenBank Shine_Dalgarno_sequence 115729 115732 . + 1 ID=Miro_200.RBS;Name=Miro_200;Parent=Miro_200 +Miro feature gene 116735 117608 . + . ID=Miro_201 +Miro GenBank CDS 116745 117608 . + 1 Alias=Miro_201;ID=Miro_201.CDS;Name=Miro_201;Note=T4 gp9/gp10-like;Parent=Miro_201;obsolete_name=Miro_239;product=baseplate structural protein +Miro GenBank Shine_Dalgarno_sequence 116735 116738 . + 1 ID=Miro_201.RBS;Name=Miro_201;Parent=Miro_201 +Miro feature gene 117595 119422 . + . ID=Miro_202 +Miro GenBank CDS 117605 119422 . + 1 Alias=Miro_202;ID=Miro_202.CDS;Name=Miro_202;Note=T4 gp9/gp10-like;Parent=Miro_202;obsolete_name=Miro_238;product=baseplate structural protein +Miro GenBank Shine_Dalgarno_sequence 117595 117597 . + 1 ID=Miro_202.RBS;Name=Miro_202;Parent=Miro_202 +Miro feature gene 119412 120090 . + . ID=Miro_203 +Miro GenBank CDS 119422 120090 . + 1 Alias=Miro_203;ID=Miro_203.CDS;Name=Miro_203;Note=T4 gp11-like;Parent=Miro_203;obsolete_name=Miro_237;product=baseplate to short tail fiber connector protein +Miro GenBank Shine_Dalgarno_sequence 119412 119415 . + 1 ID=Miro_203.RBS;Name=Miro_203;Parent=Miro_203 +Miro feature gene 81829 81940 . - . ID=Miro_142 +Miro GenBank CDS 81829 81927 . - 1 ID=Miro_142.CDS;Name=Miro_142;Parent=Miro_142;obsolete_name=Miro_022;product=hypothetical conserved;tmhelix=1 TMD %284-26%29 N out%2C C in +Miro GenBank Shine_Dalgarno_sequence 81938 81940 . - 1 Alias=Miro_142;ID=Miro_142.RBS;Name=Miro_142;Parent=Miro_142 +Miro feature gene 1 910 . - . ID=Miro_1 +Miro GenBank CDS 1 900 . - 1 ID=Miro_1.CDS;Name=Miro_1;Parent=Miro_1;obsolete_name=Miro_163;product=rIIb +Miro GenBank Shine_Dalgarno_sequence 908 910 . - 1 Alias=Miro_1;ID=Miro_1.RBS;Name=Miro_1;Parent=Miro_1 +Miro feature gene 900 3173 . - . ID=Miro_2 +Miro GenBank CDS 900 3161 . - 1 ID=Miro_2.CDS;Name=Miro_2;Parent=Miro_2;obsolete_name=Miro_162;product=rIIa +Miro GenBank Shine_Dalgarno_sequence 3171 3173 . - 1 Alias=Miro_2;ID=Miro_2.RBS;Name=Miro_2;Parent=Miro_2 +Miro feature gene 3172 3417 . - . ID=Miro_3 +Miro GenBank CDS 3172 3408 . - 1 ID=Miro_3.CDS;Name=Miro_3;Parent=Miro_3;obsolete_name=Miro_161;product=hypothetical conserved;tmhelix=1 TMD %2812-34%29 N in%2C C out +Miro GenBank Shine_Dalgarno_sequence 3414 3417 . - 1 Alias=Miro_3;ID=Miro_3.RBS;Name=Miro_3;Parent=Miro_3 +Miro feature gene 3412 3979 . - . ID=Miro_4 +Miro GenBank CDS 3412 3966 . - 1 ID=Miro_4.CDS;Name=Miro_4;Note=contains SprT domain;Parent=Miro_4;obsolete_name=Miro_160;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 3975 3979 . - 1 Alias=Miro_4;ID=Miro_4.RBS;Name=Miro_4;Parent=Miro_4 +Miro feature gene 4038 5334 . - . ID=Miro_5 +Miro GenBank CDS 4038 5324 . - 1 ID=Miro_5.CDS;Name=Miro_5;Note=T4 gp52-like;Parent=Miro_5;obsolete_name=Miro_159;product=DNA topoisomerase II medium subunit +Miro GenBank Shine_Dalgarno_sequence 5331 5334 . - 1 Alias=Miro_5;ID=Miro_5.RBS;Name=Miro_5;Parent=Miro_5 +Miro feature gene 5324 7231 . - . ID=Miro_6 +Miro GenBank CDS 5324 7222 . - 1 ID=Miro_6.CDS;Name=Miro_6;Note=T4 gp39-like;Parent=Miro_6;obsolete_name=Miro_158;product=DNA topoisomerase II%2C large subunit +Miro GenBank Shine_Dalgarno_sequence 7228 7231 . - 1 Alias=Miro_6;ID=Miro_6.RBS;Name=Miro_6;Parent=Miro_6 +Miro feature gene 7290 7465 . - . ID=Miro_7 +Miro GenBank CDS 7290 7454 . - 1 ID=Miro_7.CDS;Name=Miro_7;Note=contains zinc ribbon domain;Parent=Miro_7;obsolete_name=Miro_157;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 7463 7465 . - 1 Alias=Miro_7;ID=Miro_7.RBS;Name=Miro_7;Parent=Miro_7 +Miro feature gene 124212 124968 . + . ID=Miro_207 +Miro GenBank CDS 124222 124968 . + 1 Alias=Miro_207;ID=Miro_207.CDS;Name=Miro_207;Note=T4 gp14-like;Parent=Miro_207;obsolete_name=Miro_233;product=neck protein +Miro GenBank Shine_Dalgarno_sequence 124212 124216 . + 1 ID=Miro_207.RBS;Name=Miro_207;Parent=Miro_207 +Miro feature gene 173061 173361 . - . ID=Miro_269 +Miro GenBank CDS 173061 173351 . - 1 ID=Miro_269.CDS;Name=Miro_269;Parent=Miro_269;obsolete_name=Miro_171;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 173358 173361 . - 1 Alias=Miro_269;ID=Miro_269.RBS;Name=Miro_269;Parent=Miro_269 +Miro feature gene 66523 66819 . - . ID=Miro_112 +Miro GenBank CDS 66523 66807 . - 1 ID=Miro_112.CDS;Name=Miro_112;Parent=Miro_112;obsolete_name=Miro_052;product=hypothetical conserved;signal=signal peptidase I cleavage site 17-18 +Miro GenBank Shine_Dalgarno_sequence 66816 66819 . - 1 Alias=Miro_112;ID=Miro_112.RBS;Name=Miro_112;Parent=Miro_112 +Miro feature gene 66879 67172 . - . ID=Miro_113 +Miro GenBank CDS 66879 67163 . - 1 ID=Miro_113.CDS;Name=Miro_113;Parent=Miro_113;obsolete_name=Miro_051;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 67169 67172 . - 1 Alias=Miro_113;ID=Miro_113.RBS;Name=Miro_113;Parent=Miro_113 +Miro feature gene 44560 45732 . + . ID=Miro_69 +Miro GenBank CDS 44575 45732 . + 1 Alias=Miro_69;ID=Miro_69.CDS;Name=Miro_69;Note=T4 RNA ligase 1-like;Parent=Miro_69;obsolete_name=Miro_095;product=RNA ligase +Miro GenBank Shine_Dalgarno_sequence 44560 44562 . + 1 ID=Miro_69.RBS;Name=Miro_69;Parent=Miro_69 +Miro feature gene 44216 44594 . + . ID=Miro_68 +Miro GenBank CDS 44229 44594 . + 1 Alias=Miro_68;ID=Miro_68.CDS;Name=Miro_68;Note=contains GIY-YIG domain;Parent=Miro_68;obsolete_name=Miro_096;product=homing endonuclease +Miro GenBank Shine_Dalgarno_sequence 44216 44218 . + 1 ID=Miro_68.RBS;Name=Miro_68;Parent=Miro_68 +Miro GenBank CDS 43905 44225 . + 1 ID=Miro_67;Name=Miro_67;obsolete_name=Miro_097;product=hypothetical conserved +Miro feature gene 42748 43933 . + . ID=Miro_66 +Miro GenBank CDS 42758 43933 . + 1 Alias=Miro_66;ID=Miro_66.CDS;Name=Miro_66;Note=T4 NrdB-like;Parent=Miro_66;obsolete_name=Miro_098;product=ribonucleotide reductase%2C small subunit +Miro GenBank Shine_Dalgarno_sequence 42748 42751 . + 1 ID=Miro_66.RBS;Name=Miro_66;Parent=Miro_66 +Miro feature gene 40459 42721 . + . ID=Miro_65 +Miro GenBank CDS 40469 42721 . + 1 Alias=Miro_65;ID=Miro_65.CDS;Name=Miro_65;Note=T4 NrdA-like%3B E-val 0;Parent=Miro_65;obsolete_name=Miro_099;product=ribonucleotide reductase%2C large subunit +Miro GenBank Shine_Dalgarno_sequence 40459 40462 . + 1 ID=Miro_65.RBS;Name=Miro_65;Parent=Miro_65 +Miro feature gene 39545 40429 . + . ID=Miro_64 +Miro GenBank CDS 39554 40429 . + 1 Alias=Miro_64;ID=Miro_64.CDS;Name=Miro_64;Note=T4-like;Parent=Miro_64;obsolete_name=Miro_100;product=thymidylate synthase +Miro GenBank Shine_Dalgarno_sequence 39545 39548 . + 1 ID=Miro_64.RBS;Name=Miro_64;Parent=Miro_64 +Miro feature gene 38964 39552 . + . ID=Miro_63 +Miro GenBank CDS 38974 39552 . + 1 Alias=Miro_63;ID=Miro_63.CDS;Name=Miro_63;Note=T4-like;Parent=Miro_63;obsolete_name=Miro_101;product=dihydrofolate reductase +Miro GenBank Shine_Dalgarno_sequence 38964 38966 . + 1 ID=Miro_63.RBS;Name=Miro_63;Parent=Miro_63 +Miro feature gene 38710 38977 . + . ID=Miro_62 +Miro GenBank CDS 38720 38977 . + 1 Alias=Miro_62;ID=Miro_62.CDS;Name=Miro_62;Parent=Miro_62;obsolete_name=Miro_102;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 38710 38713 . + 1 ID=Miro_62.RBS;Name=Miro_62;Parent=Miro_62 +Miro feature gene 38483 38723 . + . ID=Miro_61 +Miro GenBank CDS 38493 38723 . + 1 Alias=Miro_61;ID=Miro_61.CDS;Name=Miro_61;Parent=Miro_61;obsolete_name=Miro_103;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 38483 38486 . + 1 ID=Miro_61.RBS;Name=Miro_61;Parent=Miro_61 +Miro feature gene 38194 38496 . + . ID=Miro_60 +Miro GenBank CDS 38206 38496 . + 1 Alias=Miro_60;ID=Miro_60.CDS;Name=Miro_60;Parent=Miro_60;obsolete_name=Miro_104;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 38194 38197 . + 1 ID=Miro_60.RBS;Name=Miro_60;Parent=Miro_60 +Miro feature gene 97404 97739 . - . ID=Miro_176 +Miro GenBank CDS 97404 97727 . - 1 ID=Miro_176.CDS;Name=Miro_176;Parent=Miro_176;obsolete_name=Miro_264;product=hypothetical conserved;tmhelix=1 TMD %2884-106%29 N in%2C C out +Miro GenBank Shine_Dalgarno_sequence 97736 97739 . - 1 Alias=Miro_176;ID=Miro_176.RBS;Name=Miro_176;Parent=Miro_176 +Miro feature gene 97756 98022 . - . ID=Miro_177 +Miro GenBank CDS 97756 98013 . - 1 ID=Miro_177.CDS;Name=Miro_177;Parent=Miro_177;obsolete_name=Miro_263;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 98020 98022 . - 1 Alias=Miro_177;ID=Miro_177.RBS;Name=Miro_177;Parent=Miro_177 +Miro feature gene 95966 96891 . - . ID=Miro_174 +Miro GenBank CDS 95966 96880 . - 1 ID=Miro_174.CDS;Name=Miro_174;Parent=Miro_174;obsolete_name=Miro_266;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 96889 96891 . - 1 Alias=Miro_174;ID=Miro_174.RBS;Name=Miro_174;Parent=Miro_174 +Miro feature gene 96877 97416 . - . ID=Miro_175 +Miro GenBank CDS 96877 97404 . - 1 ID=Miro_175.CDS;Name=Miro_175;Parent=Miro_175;obsolete_name=Miro_265;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 97414 97416 . - 1 Alias=Miro_175;ID=Miro_175.RBS;Name=Miro_175;Parent=Miro_175 +Miro feature gene 95498 95705 . - . ID=Miro_172 +Miro GenBank CDS 95498 95692 . - 1 ID=Miro_172.CDS;Name=Miro_172;Note=heat shock protein DnaJ%2C cysteine-rich domain;Parent=Miro_172;obsolete_name=Miro_268;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 95702 95705 . - 1 Alias=Miro_172;ID=Miro_172.RBS;Name=Miro_172;Parent=Miro_172 +Miro feature gene 95689 95900 . - . ID=Miro_173 +Miro GenBank CDS 95689 95889 . - 1 ID=Miro_173.CDS;Name=Miro_173;Parent=Miro_173;obsolete_name=Miro_267;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 95897 95900 . - 1 Alias=Miro_173;ID=Miro_173.RBS;Name=Miro_173;Parent=Miro_173 +Miro feature gene 94533 95117 . - . ID=Miro_170 +Miro GenBank CDS 94533 95108 . - 1 ID=Miro_170.CDS;Name=Miro_170;Parent=Miro_170;obsolete_name=Miro_270;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 95114 95117 . - 1 Alias=Miro_170;ID=Miro_170.RBS;Name=Miro_170;Parent=Miro_170 +Miro feature gene 95116 95524 . - . ID=Miro_171 +Miro GenBank CDS 95116 95514 . - 1 ID=Miro_171.CDS;Name=Miro_171;Parent=Miro_171;obsolete_name=Miro_269;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 95520 95524 . - 1 Alias=Miro_171;ID=Miro_171.RBS;Name=Miro_171;Parent=Miro_171 +Miro feature gene 98015 98410 . - . ID=Miro_178 +Miro GenBank CDS 98015 98398 . - 1 ID=Miro_178.CDS;Name=Miro_178;Parent=Miro_178;obsolete_name=Miro_262;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 98408 98410 . - 1 Alias=Miro_178;ID=Miro_178.RBS;Name=Miro_178;Parent=Miro_178 +Miro feature gene 98409 98826 . - . ID=Miro_179 +Miro GenBank CDS 98409 98816 . - 1 ID=Miro_179.CDS;Name=Miro_179;Parent=Miro_179;obsolete_name=Miro_261;product=NUDIX hydrolase +Miro GenBank Shine_Dalgarno_sequence 98823 98826 . - 1 Alias=Miro_179;ID=Miro_179.RBS;Name=Miro_179;Parent=Miro_179 +Miro feature gene 105709 106188 . - . ID=Miro_194 +Miro GenBank CDS 105709 106176 . - 1 ID=Miro_194.CDS;Name=Miro_194;Parent=Miro_194;obsolete_name=Miro_246;product=restriction endonuclease +Miro GenBank Shine_Dalgarno_sequence 106185 106188 . - 1 Alias=Miro_194;ID=Miro_194.RBS;Name=Miro_194;Parent=Miro_194 +Miro feature gene 106215 106781 . + . ID=Miro_195 +Miro GenBank CDS 106227 106781 . + 1 Alias=Miro_195;ID=Miro_195.CDS;Name=Miro_195;Note=T4 gp53-like;Parent=Miro_195;obsolete_name=Miro_245;product=baseplate wedge protein +Miro GenBank Shine_Dalgarno_sequence 106215 106218 . + 1 ID=Miro_195.RBS;Name=Miro_195;Parent=Miro_195 +Miro feature gene 106763 108547 . + . ID=Miro_196 +Miro GenBank CDS 106778 108547 . + 1 Alias=Miro_196;ID=Miro_196.CDS;Name=Miro_196;Note=T4 gp5-like;Parent=Miro_196;obsolete_name=Miro_244;product=baseplate hub structural protein and tail lysozyme +Miro GenBank Shine_Dalgarno_sequence 106763 106765 . + 1 ID=Miro_196.RBS;Name=Miro_196;Parent=Miro_196 +Miro feature gene 108542 110618 . + . ID=Miro_197 +Miro GenBank CDS 108552 110618 . + 1 Alias=Miro_197;ID=Miro_197.CDS;Name=Miro_197;Parent=Miro_197;obsolete_name=Miro_243;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 108542 108545 . + 1 ID=Miro_197.RBS;Name=Miro_197;Parent=Miro_197 +Miro feature gene 102567 103107 . - . ID=Miro_190 +Miro GenBank CDS 102567 103097 . - 1 ID=Miro_190.CDS;Name=Miro_190;Note=T4 gp19-like;Parent=Miro_190;obsolete_name=Miro_250;product=tail tube protein +Miro GenBank Shine_Dalgarno_sequence 103103 103107 . - 1 Alias=Miro_190;ID=Miro_190.RBS;Name=Miro_190;Parent=Miro_190 +Miro feature gene 103455 104255 . + . ID=Miro_191 +Miro GenBank CDS 103467 104255 . + 1 Alias=Miro_191;ID=Miro_191.CDS;Name=Miro_191;Parent=Miro_191;obsolete_name=Miro_249;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 103455 103458 . + 1 ID=Miro_191.RBS;Name=Miro_191;Parent=Miro_191 +Miro feature gene 104349 104819 . + . ID=Miro_192 +Miro GenBank CDS 104361 104819 . + 1 Alias=Miro_192;ID=Miro_192.CDS;Name=Miro_192;Note=contains AP2/ERF domain;Parent=Miro_192;obsolete_name=Miro_248;product=homing endonuclease +Miro GenBank Shine_Dalgarno_sequence 104349 104351 . + 1 ID=Miro_192.RBS;Name=Miro_192;Parent=Miro_192 +Miro feature gene 73313 73582 . - . ID=Miro_124 +Miro GenBank CDS 73313 73570 . - 1 ID=Miro_124.CDS;Name=Miro_124;Parent=Miro_124;obsolete_name=Miro_040;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 73579 73582 . - 1 Alias=Miro_124;ID=Miro_124.RBS;Name=Miro_124;Parent=Miro_124 +Miro feature gene 125036 125872 . + . ID=Miro_208 +Miro GenBank CDS 125048 125872 . + 1 Alias=Miro_208;ID=Miro_208.CDS;Name=Miro_208;Parent=Miro_208;obsolete_name=Miro_232;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 125036 125039 . + 1 ID=Miro_208.RBS;Name=Miro_208;Parent=Miro_208 +Miro feature gene 110635 112575 . + . ID=Miro_198 +Miro GenBank CDS 110650 112575 . + 1 Alias=Miro_198;ID=Miro_198.CDS;Name=Miro_198;Parent=Miro_198;obsolete_name=Miro_242;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 110635 110638 . + 1 ID=Miro_198.RBS;Name=Miro_198;Parent=Miro_198 +Miro feature gene 112645 115742 . + . ID=Miro_199 +Miro GenBank CDS 112656 115742 . + 1 Alias=Miro_199;ID=Miro_199.CDS;Name=Miro_199;Parent=Miro_199;obsolete_name=Miro_241;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 112645 112648 . + 1 ID=Miro_199.RBS;Name=Miro_199;Parent=Miro_199 +Miro feature gene 136157 136806 . + . ID=Miro_219 +Miro GenBank CDS 136168 136806 . + 1 Alias=Miro_219;ID=Miro_219.CDS;Name=Miro_219;Note=contains GIY-YIG domain;Parent=Miro_219;obsolete_name=Miro_221;product=homing endonuclease +Miro GenBank Shine_Dalgarno_sequence 136157 136160 . + 1 ID=Miro_219.RBS;Name=Miro_219;Parent=Miro_219 +Miro feature gene 125860 126369 . + . ID=Miro_209 +Miro GenBank CDS 125872 126369 . + 1 Alias=Miro_209;ID=Miro_209.CDS;Name=Miro_209;Note=T4 gp16-like;Parent=Miro_209;obsolete_name=Miro_231;product=terminase%2C small subunit +Miro GenBank Shine_Dalgarno_sequence 125860 125863 . + 1 ID=Miro_209.RBS;Name=Miro_209;Parent=Miro_209 +Miro feature gene 93915 94204 . - . ID=Miro_169 +Miro GenBank CDS 93915 94193 . - 1 ID=Miro_169.CDS;Name=Miro_169;Parent=Miro_169;obsolete_name=Miro_271;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 94201 94204 . - 1 Alias=Miro_169;ID=Miro_169.RBS;Name=Miro_169;Parent=Miro_169 +Miro feature gene 93592 93854 . - . ID=Miro_168 +Miro GenBank CDS 93592 93843 . - 1 ID=Miro_168.CDS;Name=Miro_168;Parent=Miro_168;obsolete_name=Miro_272;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 93849 93854 . - 1 Alias=Miro_168;ID=Miro_168.RBS;Name=Miro_168;Parent=Miro_168 +Miro feature gene 48763 49277 . + . ID=Miro_78 +Miro GenBank CDS 48771 49277 . + 1 Alias=Miro_78;ID=Miro_78.CDS;Name=Miro_78;Note=T4-like;Parent=Miro_78;obsolete_name=Miro_086;product=dCMP deaminase +Miro GenBank Shine_Dalgarno_sequence 48763 48765 . + 1 ID=Miro_78.RBS;Name=Miro_78;Parent=Miro_78 +Miro feature gene 49267 49634 . + . ID=Miro_79 +Miro GenBank CDS 49281 49634 . + 1 Alias=Miro_79;ID=Miro_79.CDS;Name=Miro_79;Note=T4 gp31-like;Parent=Miro_79;obsolete_name=Miro_085;product=chaperonin-GroEL +Miro GenBank Shine_Dalgarno_sequence 49267 49269 . + 1 ID=Miro_79.RBS;Name=Miro_79;Parent=Miro_79 +Miro feature gene 120090 121485 . + . ID=Miro_204 +Miro GenBank CDS 120100 121485 . + 1 Alias=Miro_204;ID=Miro_204.CDS;Name=Miro_204;Note=T4 gp12-like;Parent=Miro_204;obsolete_name=Miro_236;product=short tail fiber protein +Miro GenBank Shine_Dalgarno_sequence 120090 120093 . + 1 ID=Miro_204.RBS;Name=Miro_204;Parent=Miro_204 +Miro feature gene 47021 47916 . + . ID=Miro_74 +Miro GenBank CDS 47032 47916 . + 1 Alias=Miro_74;ID=Miro_74.CDS;Name=Miro_74;Note=contains HAD-like domain;Parent=Miro_74;obsolete_name=Miro_090;product=nucleoside triphosphate hydrolase +Miro GenBank Shine_Dalgarno_sequence 47021 47023 . + 1 ID=Miro_74.RBS;Name=Miro_74;Parent=Miro_74 +Miro feature gene 47957 48256 . + . ID=Miro_75 +Miro GenBank CDS 47969 48256 . + 1 Alias=Miro_75;ID=Miro_75.CDS;Name=Miro_75;Parent=Miro_75;obsolete_name=Miro_089;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 47957 47960 . + 1 ID=Miro_75.RBS;Name=Miro_75;Parent=Miro_75 +Miro feature gene 48240 48504 . + . ID=Miro_76 +Miro GenBank CDS 48253 48504 . + 1 Alias=Miro_76;ID=Miro_76.CDS;Name=Miro_76;Parent=Miro_76;obsolete_name=Miro_088;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 48240 48242 . + 1 ID=Miro_76.RBS;Name=Miro_76;Parent=Miro_76 +Miro feature gene 48485 48781 . + . ID=Miro_77 +Miro GenBank CDS 48497 48781 . + 1 Alias=Miro_77;ID=Miro_77.CDS;Name=Miro_77;Parent=Miro_77;obsolete_name=Miro_087;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 48485 48488 . + 1 ID=Miro_77.RBS;Name=Miro_77;Parent=Miro_77 +Miro feature gene 45718 46265 . + . ID=Miro_70 +Miro GenBank CDS 45729 46265 . + 1 Alias=Miro_70;ID=Miro_70.CDS;Name=Miro_70;Note=contains AP2/ERF domain;Parent=Miro_70;obsolete_name=Miro_094;product=homing endonuclease +Miro GenBank Shine_Dalgarno_sequence 45718 45721 . + 1 ID=Miro_70.RBS;Name=Miro_70;Parent=Miro_70 +Miro feature gene 46221 46569 . + . ID=Miro_71 +Miro GenBank CDS 46234 46569 . + 1 Alias=Miro_71;ID=Miro_71.CDS;Name=Miro_71;Note=T4 PseT.3-like;Parent=Miro_71;obsolete_name=Miro_093;product=i-spanin;tmhelix=1 TMD %2815-33%29 N out%2C C in +Miro GenBank Shine_Dalgarno_sequence 46221 46224 . + 1 ID=Miro_71.RBS;Name=Miro_71;Parent=Miro_71 +Miro feature gene 46553 46883 . + . ID=Miro_72 +Miro GenBank CDS 46566 46883 . + 1 Alias=Miro_72;ID=Miro_72.CDS;Name=Miro_72;Note=T4 PseT.2-like;Parent=Miro_72;obsolete_name=Miro_092;product=o-spanin;signal=signal peptidase II cleavage site 16-17 +Miro GenBank Shine_Dalgarno_sequence 46553 46556 . + 1 ID=Miro_72.RBS;Name=Miro_72;Parent=Miro_72 +Miro feature gene 46854 47035 . + . ID=Miro_73 +Miro GenBank CDS 46868 47035 . + 1 Alias=Miro_73;ID=Miro_73.CDS;Name=Miro_73;Parent=Miro_73;obsolete_name=Miro_091;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 46854 46856 . + 1 ID=Miro_73.RBS;Name=Miro_73;Parent=Miro_73 +Miro feature gene 90380 90770 . - . ID=Miro_161 +Miro GenBank CDS 90380 90760 . - 1 ID=Miro_161.CDS;Name=Miro_161;Parent=Miro_161;obsolete_name=Miro_003;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 90767 90770 . - 1 Alias=Miro_161;ID=Miro_161.RBS;Name=Miro_161;Parent=Miro_161 +Miro feature gene 90052 90410 . - . ID=Miro_160 +Miro GenBank CDS 90052 90399 . - 1 ID=Miro_160.CDS;Name=Miro_160;Parent=Miro_160;obsolete_name=Miro_004;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 90406 90410 . - 1 Alias=Miro_160;ID=Miro_160.RBS;Name=Miro_160;Parent=Miro_160 +Miro feature gene 91043 92201 . - . ID=Miro_163 +Miro GenBank CDS 91043 92197 . - 1 ID=Miro_163.CDS;Name=Miro_163;Note=contains 4Fe4S-binding SPASM domain;Parent=Miro_163;obsolete_name=Miro_001;product=radical SAM superfamily protein +Miro GenBank Shine_Dalgarno_sequence 92198 92201 . + 1 Alias=Miro_163;ID=Miro_163.RBS;Name=Miro_163;Parent=Miro_163 +Miro feature gene 100922 101554 . - . ID=Miro_187 +Miro GenBank CDS 100922 101545 . - 1 ID=Miro_187.CDS;Name=Miro_187;Parent=Miro_187;obsolete_name=Miro_253;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 101551 101554 . - 1 Alias=Miro_187;ID=Miro_187.RBS;Name=Miro_187;Parent=Miro_187 +Miro feature gene 100375 100923 . - . ID=Miro_186 +Miro GenBank CDS 100375 100914 . - 1 ID=Miro_186.CDS;Name=Miro_186;Parent=Miro_186;obsolete_name=Miro_254;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 100920 100923 . - 1 Alias=Miro_186;ID=Miro_186.RBS;Name=Miro_186;Parent=Miro_186 +Miro feature gene 100169 100320 . - . ID=Miro_185 +Miro GenBank CDS 100169 100309 . - 1 ID=Miro_185.CDS;Name=Miro_185;Parent=Miro_185;obsolete_name=Miro_255;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 100315 100320 . - 1 Alias=Miro_185;ID=Miro_185.RBS;Name=Miro_185;Parent=Miro_185 +Miro feature gene 90744 91055 . - . ID=Miro_162 +Miro GenBank CDS 90744 91046 . - 1 ID=Miro_162.CDS;Name=Miro_162;Parent=Miro_162;obsolete_name=Miro_002;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 91053 91055 . - 1 Alias=Miro_162;ID=Miro_162.RBS;Name=Miro_162;Parent=Miro_162 +Miro feature gene 99593 99940 . - . ID=Miro_183 +Miro GenBank CDS 99593 99928 . - 1 ID=Miro_183.CDS;Name=Miro_183;Note=contains heat shock protein DnaJ%2C cysteine-rich domain;Parent=Miro_183;obsolete_name=Miro_257;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 99938 99940 . - 1 Alias=Miro_183;ID=Miro_183.RBS;Name=Miro_183;Parent=Miro_183 +Miro feature gene 99303 99611 . - . ID=Miro_182 +Miro GenBank CDS 99303 99596 . - 1 ID=Miro_182.CDS;Name=Miro_182;Parent=Miro_182;obsolete_name=Miro_258;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 99609 99611 . - 1 Alias=Miro_182;ID=Miro_182.RBS;Name=Miro_182;Parent=Miro_182 +Miro feature gene 99059 99328 . - . ID=Miro_181 +Miro GenBank CDS 99059 99310 . - 1 ID=Miro_181.CDS;Name=Miro_181;Parent=Miro_181;obsolete_name=Miro_259;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 99325 99328 . - 1 Alias=Miro_181;ID=Miro_181.RBS;Name=Miro_181;Parent=Miro_181 +Miro feature gene 98817 99074 . - . ID=Miro_180 +Miro GenBank CDS 98817 99062 . - 1 ID=Miro_180.CDS;Name=Miro_180;Parent=Miro_180;obsolete_name=Miro_260;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 99072 99074 . - 1 Alias=Miro_180;ID=Miro_180.RBS;Name=Miro_180;Parent=Miro_180 +Miro feature gene 92931 93195 . - . ID=Miro_165 +Miro GenBank CDS 92931 93185 . - 1 ID=Miro_165.CDS;Name=Miro_165;Parent=Miro_165;obsolete_name=Miro_275;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 93192 93195 . - 1 Alias=Miro_165;ID=Miro_165.RBS;Name=Miro_165;Parent=Miro_165 +Miro feature gene 101872 102579 . - . ID=Miro_189 +Miro GenBank CDS 101872 102567 . - 1 ID=Miro_189.CDS;Name=Miro_189;Note=contains P-loop NTPase domain;Parent=Miro_189;obsolete_name=Miro_251;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 102577 102579 . - 1 Alias=Miro_189;ID=Miro_189.RBS;Name=Miro_189;Parent=Miro_189 +Miro feature gene 92203 92938 . + . ID=Miro_164 +Miro GenBank CDS 92210 92938 . + 1 Alias=Miro_164;ID=Miro_164.CDS;Name=Miro_164;Parent=Miro_164;obsolete_name=Miro_276;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 92203 92206 . - 1 ID=Miro_164.RBS;Name=Miro_164;Parent=Miro_164 +Miro feature gene 93449 93607 . - . ID=Miro_167 +Miro GenBank CDS 93449 93595 . - 1 ID=Miro_167.CDS;Name=Miro_167;Parent=Miro_167;obsolete_name=Miro_273;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 93605 93607 . - 1 Alias=Miro_167;ID=Miro_167.RBS;Name=Miro_167;Parent=Miro_167 +Miro feature gene 121485 123247 . + . ID=Miro_205 +Miro GenBank CDS 121496 123247 . + 1 Alias=Miro_205;ID=Miro_205.CDS;Name=Miro_205;Note=T4 fibritin-like;Parent=Miro_205;obsolete_name=Miro_235;product=neck whisker protein +Miro GenBank Shine_Dalgarno_sequence 121485 121489 . + 1 ID=Miro_205.RBS;Name=Miro_205;Parent=Miro_205 +Miro feature gene 93252 93463 . - . ID=Miro_166 +Miro GenBank CDS 93252 93452 . - 1 ID=Miro_166.CDS;Name=Miro_166;Parent=Miro_166;obsolete_name=Miro_274;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 93461 93463 . - 1 Alias=Miro_166;ID=Miro_166.RBS;Name=Miro_166;Parent=Miro_166 +Miro feature gene 30315 30571 . - . ID=Miro_49 +Miro GenBank CDS 30315 30560 . - 1 ID=Miro_49.CDS;Name=Miro_49;Parent=Miro_49;obsolete_name=Miro_115;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 30569 30571 . - 1 Alias=Miro_49;ID=Miro_49.RBS;Name=Miro_49;Parent=Miro_49 +Miro feature gene 29659 30330 . - . ID=Miro_48 +Miro GenBank CDS 29659 30318 . - 1 ID=Miro_48.CDS;Name=Miro_48;Note=T4 gp59-like;Parent=Miro_48;obsolete_name=Miro_116;product=helicase assembly protein +Miro GenBank Shine_Dalgarno_sequence 30328 30330 . - 1 Alias=Miro_48;ID=Miro_48.RBS;Name=Miro_48;Parent=Miro_48 +Miro GenBank DNA 1 176055 . . 1 Alias=Miro;ID=Miro;Name=Miro;date=01-JAN-1980 +Miro feature gene 70714 71046 . - . ID=Miro_118 +Miro GenBank CDS 70714 71034 . - 1 ID=Miro_118.CDS;Name=Miro_118;Parent=Miro_118;obsolete_name=Miro_046;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 71044 71046 . - 1 Alias=Miro_118;ID=Miro_118.RBS;Name=Miro_118;Parent=Miro_118 +Miro feature gene 71034 71561 . - . ID=Miro_119 +Miro GenBank CDS 71034 71549 . - 1 ID=Miro_119.CDS;Name=Miro_119;Parent=Miro_119;obsolete_name=Miro_045;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 71558 71561 . - 1 Alias=Miro_119;ID=Miro_119.RBS;Name=Miro_119;Parent=Miro_119 +Miro feature gene 25310 25609 . - . ID=Miro_41 +Miro GenBank CDS 25310 25597 . - 1 ID=Miro_41.CDS;Name=Miro_41;Parent=Miro_41;obsolete_name=Miro_123;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 25606 25609 . - 1 Alias=Miro_41;ID=Miro_41.RBS;Name=Miro_41;Parent=Miro_41 +Miro feature gene 24984 25325 . - . ID=Miro_40 +Miro GenBank CDS 24984 25313 . - 1 ID=Miro_40.CDS;Name=Miro_40;Parent=Miro_40;obsolete_name=Miro_124;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 25321 25325 . - 1 Alias=Miro_40;ID=Miro_40.RBS;Name=Miro_40;Parent=Miro_40 +Miro feature gene 26032 26607 . - . ID=Miro_43 +Miro GenBank CDS 26032 26595 . - 1 ID=Miro_43.CDS;Name=Miro_43;Parent=Miro_43;obsolete_name=Miro_121;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 26603 26607 . - 1 Alias=Miro_43;ID=Miro_43.RBS;Name=Miro_43;Parent=Miro_43 +Miro feature gene 25666 26036 . - . ID=Miro_42 +Miro GenBank CDS 25666 26028 . - 1 ID=Miro_42.CDS;Name=Miro_42;Note=T4 RegA-like;Parent=Miro_42;obsolete_name=Miro_122;product=translational repressor protein +Miro GenBank Shine_Dalgarno_sequence 26034 26036 . - 1 Alias=Miro_42;ID=Miro_42.RBS;Name=Miro_42;Parent=Miro_42 +Miro feature gene 27655 28329 . - . ID=Miro_45 +Miro GenBank CDS 27655 28320 . - 1 ID=Miro_45.CDS;Name=Miro_45;Note=T4-like;Parent=Miro_45;obsolete_name=Miro_119;product=DNA polymerase processivity component +Miro GenBank Shine_Dalgarno_sequence 28327 28329 . - 1 Alias=Miro_45;ID=Miro_45.RBS;Name=Miro_45;Parent=Miro_45 +Miro feature gene 26598 27605 . - . ID=Miro_44 +Miro GenBank CDS 26598 27596 . - 1 ID=Miro_44.CDS;Name=Miro_44;Note=T4 gp44-like;Parent=Miro_44;obsolete_name=Miro_120;product=sliding-clamp-loader subunit +Miro GenBank Shine_Dalgarno_sequence 27602 27605 . - 1 Alias=Miro_44;ID=Miro_44.RBS;Name=Miro_44;Parent=Miro_44 +Miro feature gene 28672 29656 . - . ID=Miro_47 +Miro GenBank CDS 28672 29643 . - 1 ID=Miro_47.CDS;Name=Miro_47;Note=T4 gp32-like;Parent=Miro_47;obsolete_name=Miro_117;product=ssDNA-binding protein +Miro GenBank Shine_Dalgarno_sequence 29654 29656 . - 1 Alias=Miro_47;ID=Miro_47.RBS;Name=Miro_47;Parent=Miro_47 +Miro feature gene 28347 28628 . - . ID=Miro_46 +Miro GenBank CDS 28347 28616 . - 1 ID=Miro_46.CDS;Name=Miro_46;Note=T4-like;Parent=Miro_46;obsolete_name=Miro_118;product=RNA polymerase binding protein +Miro GenBank Shine_Dalgarno_sequence 28626 28628 . - 1 Alias=Miro_46;ID=Miro_46.RBS;Name=Miro_46;Parent=Miro_46 +Miro feature gene 159724 160702 . + . ID=Miro_258 +Miro GenBank CDS 159737 160702 . + 1 Alias=Miro_258;ID=Miro_258.CDS;Name=Miro_258;Parent=Miro_258;obsolete_name=Miro_182;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 159724 159726 . + 1 ID=Miro_258.RBS;Name=Miro_258;Parent=Miro_258 +Miro feature gene 165793 166927 . + . ID=Miro_263 +Miro GenBank CDS 165803 166927 . + 1 Alias=Miro_263;ID=Miro_263.CDS;Name=Miro_263;Parent=Miro_263;obsolete_name=Miro_177;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 165793 165796 . + 1 ID=Miro_263.RBS;Name=Miro_263;Parent=Miro_263 +Miro feature gene 126351 128186 . + . ID=Miro_210 +Miro GenBank CDS 126366 128186 . + 1 Alias=Miro_210;ID=Miro_210.CDS;Name=Miro_210;Note=T4 gp17-like;Parent=Miro_210;obsolete_name=Miro_230;product=terminase%2C large subunit +Miro GenBank Shine_Dalgarno_sequence 126351 126353 . + 1 ID=Miro_210.RBS;Name=Miro_210;Parent=Miro_210 +Miro feature gene 34191 34491 . + . ID=Miro_56 +Miro GenBank CDS 34204 34491 . + 1 Alias=Miro_56;ID=Miro_56.CDS;Name=Miro_56;Parent=Miro_56;obsolete_name=Miro_108;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 34191 34195 . + 1 ID=Miro_56.RBS;Name=Miro_56;Parent=Miro_56 +Miro feature gene 34465 36172 . + . ID=Miro_57 +Miro GenBank CDS 34475 36172 . + 1 Alias=Miro_57;ID=Miro_57.CDS;Name=Miro_57;Parent=Miro_57;obsolete_name=Miro_107;product=methyl methanesulphonate-sensitivity protein +Miro GenBank Shine_Dalgarno_sequence 34465 34468 . + 1 ID=Miro_57.RBS;Name=Miro_57;Parent=Miro_57 +Miro feature gene 32797 33134 . + . ID=Miro_54 +Miro GenBank CDS 32808 33134 . + 1 Alias=Miro_54;ID=Miro_54.CDS;Name=Miro_54;Parent=Miro_54;obsolete_name=Miro_110;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 32797 32800 . + 1 ID=Miro_54.RBS;Name=Miro_54;Parent=Miro_54 +Miro feature gene 33173 34217 . + . ID=Miro_55 +Miro GenBank CDS 33186 34217 . + 1 Alias=Miro_55;ID=Miro_55.CDS;Name=Miro_55;Note=T4 exonuclease subunit 1-like;Parent=Miro_55;obsolete_name=Miro_109;product=exonuclease +Miro GenBank Shine_Dalgarno_sequence 33173 33175 . + 1 ID=Miro_55.RBS;Name=Miro_55;Parent=Miro_55 +Miro feature gene 32068 32603 . + . ID=Miro_52 +Miro GenBank CDS 32076 32603 . + 1 Alias=Miro_52;ID=Miro_52.CDS;Name=Miro_52;Parent=Miro_52;obsolete_name=Miro_112;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 32068 32070 . + 1 ID=Miro_52.RBS;Name=Miro_52;Parent=Miro_52 +Miro feature gene 32588 32815 . + . ID=Miro_53 +Miro GenBank CDS 32600 32815 . + 1 Alias=Miro_53;ID=Miro_53.CDS;Name=Miro_53;Parent=Miro_53;obsolete_name=Miro_111;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 32588 32590 . + 1 ID=Miro_53.RBS;Name=Miro_53;Parent=Miro_53 +Miro feature gene 30564 30838 . - . ID=Miro_50 +Miro GenBank CDS 30564 30827 . - 1 ID=Miro_50.CDS;Name=Miro_50;Note=T4-like;Parent=Miro_50;obsolete_name=Miro_114;product=dsDNA-binding protein +Miro GenBank Shine_Dalgarno_sequence 30834 30838 . - 1 Alias=Miro_50;ID=Miro_50.RBS;Name=Miro_50;Parent=Miro_50 +Miro feature gene 30837 31781 . - . ID=Miro_51 +Miro GenBank CDS 30837 31772 . - 1 ID=Miro_51.CDS;Name=Miro_51;Note=T4 RNase H-like;Parent=Miro_51;obsolete_name=Miro_113;product=5%27-3%27 exonuclease +Miro GenBank Shine_Dalgarno_sequence 31778 31781 . - 1 Alias=Miro_51;ID=Miro_51.RBS;Name=Miro_51;Parent=Miro_51 +Miro feature gene 36162 36363 . + . ID=Miro_58 +Miro GenBank CDS 36172 36363 . + 1 Alias=Miro_58;ID=Miro_58.CDS;Name=Miro_58;Parent=Miro_58;obsolete_name=Miro_106;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 36162 36166 . + 1 ID=Miro_58.RBS;Name=Miro_58;Parent=Miro_58 +Miro feature gene 36425 38146 . + . ID=Miro_59 +Miro GenBank CDS 36437 38146 . + 1 Alias=Miro_59;ID=Miro_59.CDS;Name=Miro_59;Note=contains DNAJ domain;Parent=Miro_59;obsolete_name=Miro_105;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 36425 36428 . + 1 ID=Miro_59.RBS;Name=Miro_59;Parent=Miro_59 +Miro feature gene 65396 65799 . + . ID=Miro_109 +Miro GenBank CDS 65407 65799 . + 1 Alias=Miro_109;ID=Miro_109.CDS;Name=Miro_109;Note=T4-like;Parent=Miro_109;obsolete_name=Miro_055;product=tail lysozyme +Miro GenBank Shine_Dalgarno_sequence 65396 65399 . + 1 ID=Miro_109.RBS;Name=Miro_109;Parent=Miro_109 +Miro feature gene 64840 65406 . + . ID=Miro_108 +Miro GenBank CDS 64852 65406 . + 1 Alias=Miro_108;ID=Miro_108.CDS;Name=Miro_108;Note=T4 gp26/gp51-like;Parent=Miro_108;obsolete_name=Miro_056;product=baseplate structural protein +Miro GenBank Shine_Dalgarno_sequence 64840 64843 . + 1 ID=Miro_108.RBS;Name=Miro_108;Parent=Miro_108 +Miro feature gene 64103 64855 . + . ID=Miro_107 +Miro GenBank CDS 64112 64855 . + 1 Alias=Miro_107;ID=Miro_107.CDS;Name=Miro_107;Note=T4 gp26/gp51-like;Parent=Miro_107;obsolete_name=Miro_057;product=baseplate structural protein +Miro GenBank Shine_Dalgarno_sequence 64103 64106 . + 1 ID=Miro_107.RBS;Name=Miro_107;Parent=Miro_107 +Miro feature gene 63210 64083 . + . ID=Miro_106 +Miro GenBank CDS 63220 64083 . + 1 Alias=Miro_106;ID=Miro_106.CDS;Name=Miro_106;Note=T4 gp19-like;Parent=Miro_106;obsolete_name=Miro_058;product=tail tube protein +Miro GenBank Shine_Dalgarno_sequence 63210 63214 . + 1 ID=Miro_106.RBS;Name=Miro_106;Parent=Miro_106 +Miro feature gene 62126 63210 . + . ID=Miro_105 +Miro GenBank CDS 62137 63210 . + 1 Alias=Miro_105;ID=Miro_105.CDS;Name=Miro_105;Note=T4 gp48-like;Parent=Miro_105;obsolete_name=Miro_059;product=tail tube assembly protein +Miro GenBank Shine_Dalgarno_sequence 62126 62129 . + 1 ID=Miro_105.RBS;Name=Miro_105;Parent=Miro_105 +Miro feature gene 60343 62126 . + . ID=Miro_104 +Miro GenBank CDS 60354 62126 . + 1 Alias=Miro_104;ID=Miro_104.CDS;Name=Miro_104;Parent=Miro_104;obsolete_name=Miro_060;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 60343 60345 . + 1 ID=Miro_104.RBS;Name=Miro_104;Parent=Miro_104 +Miro feature gene 59767 60351 . + . ID=Miro_103 +Miro GenBank CDS 59776 60351 . + 1 Alias=Miro_103;ID=Miro_103.CDS;Name=Miro_103;Note=T4 gp28-like;Parent=Miro_103;obsolete_name=Miro_061;product=baseplate structural protein +Miro GenBank Shine_Dalgarno_sequence 59767 59770 . + 1 ID=Miro_103.RBS;Name=Miro_103;Parent=Miro_103 +Miro feature gene 58597 59719 . - . ID=Miro_102 +Miro GenBank CDS 58597 59706 . - 1 ID=Miro_102.CDS;Name=Miro_102;Note=T4 gp27-like;Parent=Miro_102;obsolete_name=Miro_062;product=baseplate structural protein +Miro GenBank Shine_Dalgarno_sequence 59714 59719 . - 1 Alias=Miro_102;ID=Miro_102.RBS;Name=Miro_102;Parent=Miro_102 +Miro feature gene 58210 58600 . + . ID=Miro_101 +Miro GenBank CDS 58223 58600 . + 1 Alias=Miro_101;ID=Miro_101.CDS;Name=Miro_101;Parent=Miro_101;obsolete_name=Miro_063;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 58210 58213 . + 1 ID=Miro_101.RBS;Name=Miro_101;Parent=Miro_101 +Miro feature gene 57934 58236 . + . ID=Miro_100 +Miro GenBank CDS 57946 58236 . + 1 Alias=Miro_100;ID=Miro_100.CDS;Name=Miro_100;Parent=Miro_100;obsolete_name=Miro_064;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 57934 57936 . + 1 ID=Miro_100.RBS;Name=Miro_100;Parent=Miro_100 +Miro feature gene 142768 143313 . + . ID=Miro_228 +Miro GenBank CDS 142780 143313 . + 1 Alias=Miro_228;ID=Miro_228.CDS;Name=Miro_228;Note=contains Ig-like fold;Parent=Miro_228;obsolete_name=Miro_212;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 142768 142772 . + 1 ID=Miro_228.RBS;Name=Miro_228;Parent=Miro_228 +Miro feature gene 143314 143599 . + . ID=Miro_229 +Miro GenBank CDS 143324 143599 . + 1 Alias=Miro_229;ID=Miro_229.CDS;Name=Miro_229;Parent=Miro_229;obsolete_name=Miro_211;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 143314 143317 . + 1 ID=Miro_229.RBS;Name=Miro_229;Parent=Miro_229 +Miro feature gene 138844 139028 . + . ID=Miro_222 +Miro GenBank CDS 138852 139028 . + 1 Alias=Miro_222;ID=Miro_222.CDS;Name=Miro_222;Parent=Miro_222;obsolete_name=Miro_218;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 138844 138846 . + 1 ID=Miro_222.RBS;Name=Miro_222;Parent=Miro_222 +Miro feature gene 139303 139545 . - . ID=Miro_223 +Miro GenBank CDS 139303 139536 . - 1 ID=Miro_223.CDS;Name=Miro_223;Note=T4 UvsW-like;Parent=Miro_223;obsolete_name=Miro_217;product=ATP-dependent DNA helicase +Miro GenBank Shine_Dalgarno_sequence 139542 139545 . - 1 Alias=Miro_223;ID=Miro_223.RBS;Name=Miro_223;Parent=Miro_223 +Miro feature gene 136828 138128 . + . ID=Miro_220 +Miro GenBank CDS 136839 138128 . + 1 Alias=Miro_220;ID=Miro_220.CDS;Name=Miro_220;Note=T4 gp23/gp24-like;Parent=Miro_220;obsolete_name=Miro_220;product=major capsid protein +Miro GenBank Shine_Dalgarno_sequence 136828 136831 . + 1 ID=Miro_220.RBS;Name=Miro_220;Parent=Miro_220 +Miro feature gene 138424 138852 . + . ID=Miro_221 +Miro GenBank CDS 138433 138852 . + 1 Alias=Miro_221;ID=Miro_221.CDS;Name=Miro_221;Parent=Miro_221;obsolete_name=Miro_219;product=UvsY recombination protein +Miro GenBank Shine_Dalgarno_sequence 138424 138426 . + 1 ID=Miro_221.RBS;Name=Miro_221;Parent=Miro_221 +Miro feature gene 141819 142142 . + . ID=Miro_226 +Miro GenBank CDS 141831 142142 . + 1 Alias=Miro_226;ID=Miro_226.CDS;Name=Miro_226;Parent=Miro_226;obsolete_name=Miro_214;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 141819 141822 . + 1 ID=Miro_226.RBS;Name=Miro_226;Parent=Miro_226 +Miro feature gene 142173 142751 . + . ID=Miro_227 +Miro GenBank CDS 142182 142751 . + 1 Alias=Miro_227;ID=Miro_227.CDS;Name=Miro_227;Note=contains heat shock protein DNAJ domain;Parent=Miro_227;obsolete_name=Miro_213;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 142173 142176 . + 1 ID=Miro_227.RBS;Name=Miro_227;Parent=Miro_227 +Miro feature gene 139545 141056 . - . ID=Miro_224 +Miro GenBank CDS 139545 141044 . - 1 ID=Miro_224.CDS;Name=Miro_224;Note=contains helicase superfamily and ATP-binding domains;Parent=Miro_224;obsolete_name=Miro_216;product=DNA helicase +Miro GenBank Shine_Dalgarno_sequence 141053 141056 . - 1 Alias=Miro_224;ID=Miro_224.RBS;Name=Miro_224;Parent=Miro_224 +Miro feature gene 141104 141738 . + . ID=Miro_225 +Miro GenBank CDS 141115 141738 . + 1 Alias=Miro_225;ID=Miro_225.CDS;Name=Miro_225;Parent=Miro_225;obsolete_name=Miro_215;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 141104 141107 . + 1 ID=Miro_225.RBS;Name=Miro_225;Parent=Miro_225 +Miro feature gene 154043 154534 . + . ID=Miro_248 +Miro GenBank CDS 154052 154534 . + 1 Alias=Miro_248;ID=Miro_248.CDS;Name=Miro_248;Note=T4 gp49-like;Parent=Miro_248;obsolete_name=Miro_192;product=recombination endonuclease +Miro GenBank Shine_Dalgarno_sequence 154043 154045 . + 1 ID=Miro_248.RBS;Name=Miro_248;Parent=Miro_248 +Miro feature gene 154521 154857 . + . ID=Miro_249 +Miro GenBank CDS 154531 154857 . + 1 Alias=Miro_249;ID=Miro_249.CDS;Name=Miro_249;Parent=Miro_249;obsolete_name=Miro_191;product=hypothetical novel +Miro GenBank Shine_Dalgarno_sequence 154521 154523 . + 1 ID=Miro_249.RBS;Name=Miro_249;Parent=Miro_249 +Miro feature gene 149229 149828 . + . ID=Miro_240 +Miro GenBank CDS 149247 149828 . + 1 Alias=Miro_240;ID=Miro_240.CDS;Name=Miro_240;Parent=Miro_240;obsolete_name=Miro_200;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 149229 149232 . + 1 ID=Miro_240.RBS;Name=Miro_240;Parent=Miro_240 +Miro feature gene 149813 150346 . + . ID=Miro_241 +Miro GenBank CDS 149822 150346 . + 1 Alias=Miro_241;ID=Miro_241.CDS;Name=Miro_241;Parent=Miro_241;obsolete_name=Miro_199;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 149813 149815 . + 1 ID=Miro_241.RBS;Name=Miro_241;Parent=Miro_241 +Miro feature gene 150412 150684 . + . ID=Miro_242 +Miro GenBank CDS 150424 150684 . + 1 Alias=Miro_242;ID=Miro_242.CDS;Name=Miro_242;Parent=Miro_242;obsolete_name=Miro_198;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 150412 150415 . + 1 ID=Miro_242.RBS;Name=Miro_242;Parent=Miro_242 +Miro feature gene 150684 151143 . + . ID=Miro_243 +Miro GenBank CDS 150694 151143 . + 1 Alias=Miro_243;ID=Miro_243.CDS;Name=Miro_243;Parent=Miro_243;obsolete_name=Miro_197;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 150684 150687 . + 1 ID=Miro_243.RBS;Name=Miro_243;Parent=Miro_243 +Miro feature gene 151160 152604 . + . ID=Miro_244 +Miro GenBank CDS 151171 152604 . + 1 Alias=Miro_244;ID=Miro_244.CDS;Name=Miro_244;Note=contains quinolinate phosphoribosyl transferase domain;Parent=Miro_244;obsolete_name=Miro_196;product=nicotinamide phosphoribosyl transferase +Miro GenBank Shine_Dalgarno_sequence 151160 151163 . + 1 ID=Miro_244.RBS;Name=Miro_244;Parent=Miro_244 +Miro feature gene 152576 152893 . + . ID=Miro_245 +Miro GenBank CDS 152591 152893 . + 1 Alias=Miro_245;ID=Miro_245.CDS;Name=Miro_245;Parent=Miro_245;obsolete_name=Miro_195;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 152576 152579 . + 1 ID=Miro_245.RBS;Name=Miro_245;Parent=Miro_245 +Miro feature gene 153004 153741 . + . ID=Miro_246 +Miro GenBank CDS 153016 153741 . + 1 Alias=Miro_246;ID=Miro_246.CDS;Name=Miro_246;Note=T4-like;Parent=Miro_246;obsolete_name=Miro_194;product=DNA adenine methylase +Miro GenBank Shine_Dalgarno_sequence 153004 153006 . + 1 ID=Miro_246.RBS;Name=Miro_246;Parent=Miro_246 +Miro feature gene 153741 154019 . + . ID=Miro_247 +Miro GenBank CDS 153750 154019 . + 1 Alias=Miro_247;ID=Miro_247.CDS;Name=Miro_247;Note=T4 NrdC-like;Parent=Miro_247;obsolete_name=Miro_193;product=glutaredoxin +Miro GenBank Shine_Dalgarno_sequence 153741 153744 . + 1 ID=Miro_247.RBS;Name=Miro_247;Parent=Miro_247 + +Miro feature gene 12732 14075 . - . ID=Miro_23 +Miro GenBank CDS 12732 14060 . - 1 ID=Miro_23.CDS;Name=Miro_23;Note=contains P-loop containing nucleoside triphosphate hydrolase domain;Parent=Miro_23;obsolete_name=Miro_141;product=DNA helicase +Miro GenBank Shine_Dalgarno_sequence 14073 14075 . - 1 Alias=Miro_23;ID=Miro_23.RBS;Name=Miro_23;Parent=Miro_23 + +Miro feature gene 12399 12716 . - . ID=Miro_22 +Miro GenBank CDS 12399 12707 . - 1 ID=Miro_22.CDS;Name=Miro_22;Parent=Miro_22;obsolete_name=Miro_142;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 12713 12716 . - 1 Alias=Miro_22;ID=Miro_22.RBS;Name=Miro_22;Parent=Miro_22 +Miro feature gene 12114 12410 . - . ID=Miro_21 +Miro GenBank CDS 12114 12398 . - 1 ID=Miro_21.CDS;Name=Miro_21;Parent=Miro_21;obsolete_name=Miro_143;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 12407 12410 . - 1 Alias=Miro_21;ID=Miro_21.RBS;Name=Miro_21;Parent=Miro_21 +Miro feature gene 11728 12126 . - . ID=Miro_20 +Miro GenBank CDS 11728 12117 . - 1 ID=Miro_20.CDS;Name=Miro_20;Parent=Miro_20;obsolete_name=Miro_144;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 12123 12126 . - 1 Alias=Miro_20;ID=Miro_20.RBS;Name=Miro_20;Parent=Miro_20 +Miro feature gene 15073 16108 . - . ID=Miro_27 +Miro GenBank CDS 15073 16098 . - 1 ID=Miro_27.CDS;Name=Miro_27;Note=T4-like;Parent=Miro_27;obsolete_name=Miro_137;product=DNA primase +Miro GenBank Shine_Dalgarno_sequence 16104 16108 . - 1 Alias=Miro_27;ID=Miro_27.RBS;Name=Miro_27;Parent=Miro_27 +Miro feature gene 14529 15074 . - . ID=Miro_26 +Miro GenBank CDS 14529 15065 . - 1 ID=Miro_26.CDS;Name=Miro_26;Parent=Miro_26;obsolete_name=Miro_138;product=dCTP pyrophosphatase +Miro GenBank Shine_Dalgarno_sequence 15072 15074 . - 1 Alias=Miro_26;ID=Miro_26.RBS;Name=Miro_26;Parent=Miro_26 +Miro feature gene 14344 14545 . - . ID=Miro_25 +Miro GenBank CDS 14344 14529 . - 1 ID=Miro_25.CDS;Name=Miro_25;Parent=Miro_25;obsolete_name=Miro_139;product=hypothetical conserved;tmhelix=2TMDs %287-29%2C 39-57%29 N in%2C C in +Miro GenBank Shine_Dalgarno_sequence 14543 14545 . - 1 Alias=Miro_25;ID=Miro_25.RBS;Name=Miro_25;Parent=Miro_25 +Miro feature gene 14057 14358 . - . ID=Miro_24 +Miro GenBank CDS 14057 14347 . - 1 ID=Miro_24.CDS;Name=Miro_24;Parent=Miro_24;obsolete_name=Miro_140;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 14355 14358 . - 1 Alias=Miro_24;ID=Miro_24.RBS;Name=Miro_24;Parent=Miro_24 +Miro feature gene 16418 16647 . - . ID=Miro_29 +Miro GenBank CDS 16418 16636 . - 1 ID=Miro_29.CDS;Name=Miro_29;Parent=Miro_29;obsolete_name=Miro_135;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 16644 16647 . - 1 Alias=Miro_29;ID=Miro_29.RBS;Name=Miro_29;Parent=Miro_29 +Miro feature gene 16102 16375 . - . ID=Miro_28 +Miro GenBank CDS 16102 16362 . - 1 ID=Miro_28.CDS;Name=Miro_28;Note=contains zinc finger domain;Parent=Miro_28;obsolete_name=Miro_136;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 16370 16375 . - 1 Alias=Miro_28;ID=Miro_28.RBS;Name=Miro_28;Parent=Miro_28 +Miro feature gene 76662 77733 . - . ID=Miro_132 +Miro GenBank CDS 76662 77723 . - 1 ID=Miro_132.CDS;Name=Miro_132;Parent=Miro_132;obsolete_name=Miro_032;product=NUDIX hydrolase +Miro GenBank Shine_Dalgarno_sequence 77730 77733 . - 1 Alias=Miro_132;ID=Miro_132.RBS;Name=Miro_132;Parent=Miro_132 +Miro feature gene 77900 78824 . - . ID=Miro_133 +Miro GenBank CDS 77900 78814 . - 1 ID=Miro_133.CDS;Name=Miro_133;Parent=Miro_133;obsolete_name=Miro_031;product=hypothetical conserved;signal=signal peptidase I cleavage site 34-35 +Miro GenBank Shine_Dalgarno_sequence 78822 78824 . - 1 Alias=Miro_133;ID=Miro_133.RBS;Name=Miro_133;Parent=Miro_133 +Miro feature gene 76025 76309 . - . ID=Miro_130 +Miro GenBank CDS 76025 76297 . - 1 ID=Miro_130.CDS;Name=Miro_130;Parent=Miro_130;obsolete_name=Miro_034;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 76307 76309 . - 1 Alias=Miro_130;ID=Miro_130.RBS;Name=Miro_130;Parent=Miro_130 +Miro feature gene 76294 76498 . - . ID=Miro_131 +Miro GenBank CDS 76294 76488 . - 1 ID=Miro_131.CDS;Name=Miro_131;Parent=Miro_131;obsolete_name=Miro_033;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 76495 76498 . - 1 Alias=Miro_131;ID=Miro_131.RBS;Name=Miro_131;Parent=Miro_131 +Miro feature gene 79668 80071 . - . ID=Miro_136 +Miro GenBank CDS 79668 80060 . - 1 ID=Miro_136.CDS;Name=Miro_136;Parent=Miro_136;obsolete_name=Miro_028;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 80067 80071 . - 1 Alias=Miro_136;ID=Miro_136.RBS;Name=Miro_136;Parent=Miro_136 +Miro feature gene 80077 80695 . - . ID=Miro_137 +Miro GenBank CDS 80077 80685 . - 1 ID=Miro_137.CDS;Name=Miro_137;Note=contains P-loop containing nucleoside triphosphate hydrolase;Parent=Miro_137;obsolete_name=Miro_027;product=thymidine kinase +Miro GenBank Shine_Dalgarno_sequence 80693 80695 . - 1 Alias=Miro_137;ID=Miro_137.RBS;Name=Miro_137;Parent=Miro_137 +Miro feature gene 78886 79317 . - . ID=Miro_134 +Miro GenBank CDS 78886 79308 . - 1 ID=Miro_134.CDS;Name=Miro_134;Parent=Miro_134;obsolete_name=Miro_030;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 79314 79317 . - 1 Alias=Miro_134;ID=Miro_134.RBS;Name=Miro_134;Parent=Miro_134 +Miro feature gene 79280 79572 . - . ID=Miro_135 +Miro GenBank CDS 79280 79561 . - 1 ID=Miro_135.CDS;Name=Miro_135;Parent=Miro_135;obsolete_name=Miro_029;product=hypothetical conserved;tmhelix=2TMDs %287-24%2C 39-61%29 N out%2C C in +Miro GenBank Shine_Dalgarno_sequence 79570 79572 . - 1 Alias=Miro_135;ID=Miro_135.RBS;Name=Miro_135;Parent=Miro_135 +Miro feature gene 80678 80889 . - . ID=Miro_138 +Miro GenBank CDS 80678 80875 . - 1 ID=Miro_138.CDS;Name=Miro_138;Parent=Miro_138;obsolete_name=Miro_026;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 80886 80889 . - 1 Alias=Miro_138;ID=Miro_138.RBS;Name=Miro_138;Parent=Miro_138 +Miro feature gene 80868 81097 . - . ID=Miro_139 +Miro GenBank CDS 80868 81083 . - 1 ID=Miro_139.CDS;Name=Miro_139;Parent=Miro_139;obsolete_name=Miro_025;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 81095 81097 . - 1 Alias=Miro_139;ID=Miro_139.RBS;Name=Miro_139;Parent=Miro_139 +Miro feature gene 128192 130197 . + . ID=Miro_211 +Miro GenBank CDS 128206 130197 . + 1 Alias=Miro_211;ID=Miro_211.CDS;Name=Miro_211;Note=T4 gp18-like;Parent=Miro_211;obsolete_name=Miro_229;product=tail sheath protein +Miro GenBank Shine_Dalgarno_sequence 128192 128195 . + 1 ID=Miro_211.RBS;Name=Miro_211;Parent=Miro_211 +Miro feature gene 148228 149257 . + . ID=Miro_239 +Miro GenBank CDS 148238 149257 . + 1 Alias=Miro_239;ID=Miro_239.CDS;Name=Miro_239;Note=T4 Rnl2-like;Parent=Miro_239;obsolete_name=Miro_201;product=RNA ligase +Miro GenBank Shine_Dalgarno_sequence 148228 148231 . + 1 ID=Miro_239.RBS;Name=Miro_239;Parent=Miro_239 +Miro feature gene 99939 100090 . - . ID=Miro_184 +Miro GenBank CDS 99939 100079 . - 1 ID=Miro_184.CDS;Name=Miro_184;Parent=Miro_184;obsolete_name=Miro_256;product=hypothetical conserved;tmhelix=1 TMD %2819-41%29 N in%2C C out +Miro GenBank Shine_Dalgarno_sequence 100085 100090 . - 1 Alias=Miro_184;ID=Miro_184.RBS;Name=Miro_184;Parent=Miro_184 +Miro feature gene 146845 147029 . + . ID=Miro_235 +Miro GenBank CDS 146853 147029 . + 1 Alias=Miro_235;ID=Miro_235.CDS;Name=Miro_235;Parent=Miro_235;obsolete_name=Miro_205;product=hypothetical conserved;tmhelix=2TMDs %285-27%2C 31-50%29 N in%2C C in +Miro GenBank Shine_Dalgarno_sequence 146845 146847 . + 1 ID=Miro_235.RBS;Name=Miro_235;Parent=Miro_235 +Miro feature gene 146530 146856 . + . ID=Miro_234 +Miro GenBank CDS 146539 146856 . + 1 Alias=Miro_234;ID=Miro_234.CDS;Name=Miro_234;Parent=Miro_234;obsolete_name=Miro_206;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 146530 146533 . + 1 ID=Miro_234.RBS;Name=Miro_234;Parent=Miro_234 +Miro feature gene 147343 147710 . + . ID=Miro_237 +Miro GenBank CDS 147354 147710 . + 1 Alias=Miro_237;ID=Miro_237.CDS;Name=Miro_237;Parent=Miro_237;obsolete_name=Miro_203;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 147343 147346 . + 1 ID=Miro_237.RBS;Name=Miro_237;Parent=Miro_237 +Miro feature gene 147016 147352 . + . ID=Miro_236 +Miro GenBank CDS 147026 147352 . + 1 Alias=Miro_236;ID=Miro_236.CDS;Name=Miro_236;Parent=Miro_236;obsolete_name=Miro_204;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 147016 147019 . + 1 ID=Miro_236.RBS;Name=Miro_236;Parent=Miro_236 +Miro feature gene 144163 144638 . - . ID=Miro_231 +Miro GenBank CDS 144163 144627 . - 1 ID=Miro_231.CDS;Name=Miro_231;Note=contains HAD-like domain;Parent=Miro_231;obsolete_name=Miro_209;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 144635 144638 . - 1 Alias=Miro_231;ID=Miro_231.RBS;Name=Miro_231;Parent=Miro_231 +Miro feature gene 143604 144131 . + . ID=Miro_230 +Miro GenBank CDS 143613 144131 . + 1 Alias=Miro_230;ID=Miro_230.CDS;Name=Miro_230;Parent=Miro_230;obsolete_name=Miro_210;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 143604 143606 . + 1 ID=Miro_230.RBS;Name=Miro_230;Parent=Miro_230 +Miro feature gene 145620 146506 . + . ID=Miro_233 +Miro GenBank CDS 145631 146506 . + 1 Alias=Miro_233;ID=Miro_233.CDS;Name=Miro_233;Parent=Miro_233;obsolete_name=Miro_207;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 145620 145623 . + 1 ID=Miro_233.RBS;Name=Miro_233;Parent=Miro_233 +Miro feature gene 144677 145528 . - . ID=Miro_232 +Miro GenBank CDS 144677 145516 . - 1 ID=Miro_232.CDS;Name=Miro_232;Note=contains P-loop NTPase and zeta toxin domains;Parent=Miro_232;obsolete_name=Miro_208;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 145525 145528 . - 1 Alias=Miro_232;ID=Miro_232.RBS;Name=Miro_232;Parent=Miro_232 +Miro feature gene 160735 161413 . + . ID=Miro_259 +Miro GenBank CDS 160745 161413 . + 1 Alias=Miro_259;ID=Miro_259.CDS;Name=Miro_259;Parent=Miro_259;obsolete_name=Miro_181;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 160735 160739 . + 1 ID=Miro_259.RBS;Name=Miro_259;Parent=Miro_259 +Miro feature gene 65834 66298 . - . ID=Miro_110 +Miro GenBank CDS 65834 66289 . - 1 ID=Miro_110.CDS;Name=Miro_110;Parent=Miro_110;obsolete_name=Miro_054;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 66295 66298 . - 1 Alias=Miro_110;ID=Miro_110.RBS;Name=Miro_110;Parent=Miro_110 +Miro GenBank CDS 157781 157987 . + 1 ID=Miro_253;Name=Miro_253;obsolete_name=Miro_187;product=hypothetical conserved +Miro feature gene 157275 157781 . + . ID=Miro_252 +Miro GenBank CDS 157287 157781 . + 1 Alias=Miro_252;ID=Miro_252.CDS;Name=Miro_252;Parent=Miro_252;obsolete_name=Miro_188;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 157275 157278 . + 1 ID=Miro_252.RBS;Name=Miro_252;Parent=Miro_252 +Miro feature gene 157033 157287 . + . ID=Miro_251 +Miro GenBank CDS 157045 157287 . + 1 Alias=Miro_251;ID=Miro_251.CDS;Name=Miro_251;Parent=Miro_251;obsolete_name=Miro_189;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 157033 157037 . + 1 ID=Miro_251.RBS;Name=Miro_251;Parent=Miro_251 +Miro feature gene 154844 156977 . + . ID=Miro_250 +Miro GenBank CDS 154854 156977 . + 1 Alias=Miro_250;ID=Miro_250.CDS;Name=Miro_250;Note=T4-like%3B contains glycine radical domain;Parent=Miro_250;obsolete_name=Miro_190;product=anaerobic ribonucleoside-triphosphate reductase +Miro GenBank Shine_Dalgarno_sequence 154844 154846 . + 1 ID=Miro_250.RBS;Name=Miro_250;Parent=Miro_250 +Miro feature gene 159166 159667 . + . ID=Miro_257 +Miro GenBank CDS 159176 159667 . + 1 Alias=Miro_257;ID=Miro_257.CDS;Name=Miro_257;Note=T4 NrdG-like;Parent=Miro_257;obsolete_name=Miro_183;product=ribonucleoside-triphosphate reductase activating protein +Miro GenBank Shine_Dalgarno_sequence 159166 159169 . + 1 ID=Miro_257.RBS;Name=Miro_257;Parent=Miro_257 +Miro feature gene 158528 159179 . + . ID=Miro_256 +Miro GenBank CDS 158538 159179 . + 1 Alias=Miro_256;ID=Miro_256.CDS;Name=Miro_256;Note=contains nuclease associated modular 3 and winged helix-turn-helix DNA-binding domains;Parent=Miro_256;obsolete_name=Miro_184;product=homing endonuclease +Miro GenBank Shine_Dalgarno_sequence 158528 158530 . + 1 ID=Miro_256.RBS;Name=Miro_256;Parent=Miro_256 +Miro feature gene 158309 158511 . + . ID=Miro_255 +Miro GenBank CDS 158320 158511 . + 1 Alias=Miro_255;ID=Miro_255.CDS;Name=Miro_255;Parent=Miro_255;obsolete_name=Miro_185;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 158309 158314 . + 1 ID=Miro_255.RBS;Name=Miro_255;Parent=Miro_255 +Miro feature gene 157997 158259 . + . ID=Miro_254 +Miro GenBank CDS 158008 158259 . + 1 Alias=Miro_254;ID=Miro_254.CDS;Name=Miro_254;Parent=Miro_254;obsolete_name=Miro_186;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 157997 158000 . + 1 ID=Miro_254.RBS;Name=Miro_254;Parent=Miro_254 +Miro feature gene 16633 17132 . - . ID=Miro_30 +Miro GenBank CDS 16633 17121 . - 1 ID=Miro_30.CDS;Name=Miro_30;Note=T4 gp23/gp24-like;Parent=Miro_30;obsolete_name=Miro_134;product=major capsid protein +Miro GenBank Shine_Dalgarno_sequence 17130 17132 . - 1 Alias=Miro_30;ID=Miro_30.RBS;Name=Miro_30;Parent=Miro_30 +Miro feature gene 17127 17819 . - . ID=Miro_31 +Miro GenBank CDS 17127 17813 . - 1 ID=Miro_31.CDS;Name=Miro_31;Note=contains N-6 adenine-specific DNA methylase conserved site;Parent=Miro_31;obsolete_name=Miro_133;product=radical SAM protein +Miro GenBank Shine_Dalgarno_sequence 17817 17819 . - 1 Alias=Miro_31;ID=Miro_31.RBS;Name=Miro_31;Parent=Miro_31 +Miro feature gene 17839 18240 . - . ID=Miro_32 +Miro GenBank CDS 17839 18231 . - 1 ID=Miro_32.CDS;Name=Miro_32;Parent=Miro_32;obsolete_name=Miro_132;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 18237 18240 . - 1 Alias=Miro_32;ID=Miro_32.RBS;Name=Miro_32;Parent=Miro_32 +Miro feature gene 18228 18475 . - . ID=Miro_33 +Miro GenBank CDS 18228 18464 . - 1 ID=Miro_33.CDS;Name=Miro_33;Parent=Miro_33;obsolete_name=Miro_131;product=hypothetical conserved;tmhelix=2TMDs %285-27%2C 38-60%29 N in%2C C in +Miro GenBank Shine_Dalgarno_sequence 18470 18475 . - 1 Alias=Miro_33;ID=Miro_33.RBS;Name=Miro_33;Parent=Miro_33 +Miro feature gene 18556 18822 . - . ID=Miro_34 +Miro GenBank CDS 18556 18810 . - 1 ID=Miro_34.CDS;Name=Miro_34;Parent=Miro_34;obsolete_name=Miro_130;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 18818 18822 . - 1 Alias=Miro_34;ID=Miro_34.RBS;Name=Miro_34;Parent=Miro_34 +Miro feature gene 18889 19168 . - . ID=Miro_35 +Miro GenBank CDS 18889 19158 . - 1 ID=Miro_35.CDS;Name=Miro_35;Parent=Miro_35;obsolete_name=Miro_129;product=hypothetical conserved;tmhelix=2TMDs %287-29%2C 44-66%29 N in%2C C in +Miro GenBank Shine_Dalgarno_sequence 19165 19168 . - 1 Alias=Miro_35;ID=Miro_35.RBS;Name=Miro_35;Parent=Miro_35 +Miro feature gene 19202 20648 . - . ID=Miro_36 +Miro GenBank CDS 19202 20638 . - 1 ID=Miro_36.CDS;Name=Miro_36;Note=T4 gp41-like;Parent=Miro_36;obsolete_name=Miro_128;product=DNA helicase +Miro GenBank Shine_Dalgarno_sequence 20646 20648 . - 1 Alias=Miro_36;ID=Miro_36.RBS;Name=Miro_36;Parent=Miro_36 +Miro feature gene 20648 20978 . - . ID=Miro_37 +Miro GenBank CDS 20648 20968 . - 1 ID=Miro_37.CDS;Name=Miro_37;Note=T4 gp40-like;Parent=Miro_37;obsolete_name=Miro_127;product=head formation protein +Miro GenBank Shine_Dalgarno_sequence 20975 20978 . - 1 Alias=Miro_37;ID=Miro_37.RBS;Name=Miro_37;Parent=Miro_37 +Miro feature gene 21006 22174 . - . ID=Miro_38 +Miro GenBank CDS 21006 22163 . - 1 ID=Miro_38.CDS;Name=Miro_38;Note=T4 RecA-like;Parent=Miro_38;obsolete_name=Miro_126;product=DNA recombination and repair protein;tmhelix=1 TMD %2840-62%29 N in%2C C out +Miro GenBank Shine_Dalgarno_sequence 22172 22174 . - 1 Alias=Miro_38;ID=Miro_38.RBS;Name=Miro_38;Parent=Miro_38 +Miro feature gene 22238 24954 . - . ID=Miro_39 +Miro GenBank CDS 22238 24937 . - 1 ID=Miro_39.CDS;Name=Miro_39;Note=T4 gp43-like;Parent=Miro_39;obsolete_name=Miro_125;product=DNA polymerase +Miro GenBank Shine_Dalgarno_sequence 24951 24954 . - 1 Alias=Miro_39;ID=Miro_39.RBS;Name=Miro_39;Parent=Miro_39 +Miro feature gene 101597 101867 . - . ID=Miro_188 +Miro GenBank CDS 101597 101857 . - 1 ID=Miro_188.CDS;Name=Miro_188;Parent=Miro_188;obsolete_name=Miro_252;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 101864 101867 . - 1 Alias=Miro_188;ID=Miro_188.RBS;Name=Miro_188;Parent=Miro_188 +Miro feature gene 73570 73827 . - . ID=Miro_125 +Miro GenBank CDS 73570 73815 . - 1 ID=Miro_125.CDS;Name=Miro_125;Parent=Miro_125;obsolete_name=Miro_039;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 73823 73827 . - 1 Alias=Miro_125;ID=Miro_125.RBS;Name=Miro_125;Parent=Miro_125 +Miro feature gene 66297 66533 . - . ID=Miro_111 +Miro GenBank CDS 66297 66521 . - 1 ID=Miro_111.CDS;Name=Miro_111;Parent=Miro_111;obsolete_name=Miro_053;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 66530 66533 . - 1 Alias=Miro_111;ID=Miro_111.RBS;Name=Miro_111;Parent=Miro_111 +Miro feature gene 74819 75206 . - . ID=Miro_127 +Miro GenBank CDS 74819 75196 . - 1 ID=Miro_127.CDS;Name=Miro_127;Parent=Miro_127;obsolete_name=Miro_037;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 75203 75206 . - 1 Alias=Miro_127;ID=Miro_127.RBS;Name=Miro_127;Parent=Miro_127 +Miro feature gene 73812 74832 . - . ID=Miro_126 +Miro GenBank CDS 73812 74819 . - 1 ID=Miro_126.CDS;Name=Miro_126;Note=T4 nrdC.11-like;Parent=Miro_126;obsolete_name=Miro_038;product=nucleotidyltransferase +Miro GenBank Shine_Dalgarno_sequence 74829 74832 . - 1 Alias=Miro_126;ID=Miro_126.RBS;Name=Miro_126;Parent=Miro_126 +Miro feature gene 71861 72037 . - . ID=Miro_121 +Miro GenBank CDS 71861 72028 . - 1 ID=Miro_121.CDS;Name=Miro_121;Parent=Miro_121;obsolete_name=Miro_043;product=hypothetical conserved;tmhelix=2TMDs %289-26%2C 30-52%29 N in%2C C in +Miro GenBank Shine_Dalgarno_sequence 72034 72037 . - 1 Alias=Miro_121;ID=Miro_121.RBS;Name=Miro_121;Parent=Miro_121 +Miro feature gene 71577 71871 . - . ID=Miro_120 +Miro GenBank CDS 71577 71861 . - 1 ID=Miro_120.CDS;Name=Miro_120;Parent=Miro_120;obsolete_name=Miro_044;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 71868 71871 . - 1 Alias=Miro_120;ID=Miro_120.RBS;Name=Miro_120;Parent=Miro_120 +Miro feature gene 72390 73331 . - . ID=Miro_123 +Miro GenBank CDS 72390 73316 . - 1 ID=Miro_123.CDS;Name=Miro_123;Note=C-5 cytosine-specific active site;Parent=Miro_123;obsolete_name=Miro_041;product=cytosine-specific methyltransferase +Miro GenBank Shine_Dalgarno_sequence 73329 73331 . - 1 Alias=Miro_123;ID=Miro_123.RBS;Name=Miro_123;Parent=Miro_123 +Miro feature gene 72068 72357 . - . ID=Miro_122 +Miro GenBank CDS 72068 72346 . - 1 ID=Miro_122.CDS;Name=Miro_122;Parent=Miro_122;obsolete_name=Miro_042;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 72354 72357 . - 1 Alias=Miro_122;ID=Miro_122.RBS;Name=Miro_122;Parent=Miro_122 +Miro feature gene 75417 76034 . - . ID=Miro_129 +Miro GenBank CDS 75417 76022 . - 1 ID=Miro_129.CDS;Name=Miro_129;Parent=Miro_129;obsolete_name=Miro_035;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 76031 76034 . - 1 Alias=Miro_129;ID=Miro_129.RBS;Name=Miro_129;Parent=Miro_129 +Miro feature gene 75193 75434 . - . ID=Miro_128 +Miro GenBank CDS 75193 75420 . - 1 ID=Miro_128.CDS;Name=Miro_128;Parent=Miro_128;obsolete_name=Miro_036;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 75430 75434 . - 1 Alias=Miro_128;ID=Miro_128.RBS;Name=Miro_128;Parent=Miro_128 +Miro feature gene 133686 134487 . + . ID=Miro_217 +Miro GenBank CDS 133699 134487 . + 1 Alias=Miro_217;ID=Miro_217.CDS;Name=Miro_217;Parent=Miro_217;obsolete_name=Miro_223;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 133686 133689 . + 1 ID=Miro_217.RBS;Name=Miro_217;Parent=Miro_217 +Miro feature gene 172795 173074 . - . ID=Miro_268 +Miro GenBank CDS 172795 173064 . - 1 ID=Miro_268.CDS;Name=Miro_268;Parent=Miro_268;obsolete_name=Miro_172;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 173071 173074 . - 1 Alias=Miro_268;ID=Miro_268.RBS;Name=Miro_268;Parent=Miro_268 +Miro feature gene 133007 133666 . + . ID=Miro_216 +Miro GenBank CDS 133019 133666 . + 1 Alias=Miro_216;ID=Miro_216.CDS;Name=Miro_216;Note=T4 gp21-like;Parent=Miro_216;obsolete_name=Miro_224;product=prohead core protein protease +Miro GenBank Shine_Dalgarno_sequence 133007 133010 . + 1 ID=Miro_216.RBS;Name=Miro_216;Parent=Miro_216 +Miro feature gene 171490 172030 . + . ID=Miro_266 +Miro GenBank CDS 171503 172030 . + 1 Alias=Miro_266;ID=Miro_266.CDS;Name=Miro_266;Note=T2 gp38-like;Parent=Miro_266;obsolete_name=Miro_174;product=receptor-recognizing protein +Miro GenBank Shine_Dalgarno_sequence 171490 171494 . + 1 ID=Miro_266.RBS;Name=Miro_266;Parent=Miro_266 +Miro feature gene 172135 172794 . + . ID=Miro_267 +Miro GenBank CDS 172147 172794 . + 1 Alias=Miro_267;ID=Miro_267.CDS;Name=Miro_267;Note=T4 gpT-like;Parent=Miro_267;obsolete_name=Miro_173;product=holin;tmhelix=1 TMD %2829-47%29 N in%2C C out +Miro GenBank Shine_Dalgarno_sequence 172135 172137 . + 1 ID=Miro_267.RBS;Name=Miro_267;Parent=Miro_267 +Miro feature gene 166968 167645 . + . ID=Miro_264 +Miro GenBank CDS 166977 167645 . + 1 Alias=Miro_264;ID=Miro_264.CDS;Name=Miro_264;Note=T4 gp36-like;Parent=Miro_264;obsolete_name=Miro_176;product=tail fiber +Miro GenBank Shine_Dalgarno_sequence 166968 166971 . + 1 ID=Miro_264.RBS;Name=Miro_264;Parent=Miro_264 +Miro feature gene 167645 171466 . + . ID=Miro_265 +Miro GenBank CDS 167654 171466 . + 1 Alias=Miro_265;ID=Miro_265.CDS;Name=Miro_265;Parent=Miro_265;obsolete_name=Miro_175;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 167645 167648 . + 1 ID=Miro_265.RBS;Name=Miro_265;Parent=Miro_265 +Miro feature gene 162017 165803 . + . ID=Miro_262 +Miro GenBank CDS 162030 165803 . + 1 Alias=Miro_262;ID=Miro_262.CDS;Name=Miro_262;Parent=Miro_262;obsolete_name=Miro_178;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 162017 162020 . + 1 ID=Miro_262.RBS;Name=Miro_262;Parent=Miro_262 +Miro feature gene 132602 133016 . + . ID=Miro_215 +Miro GenBank CDS 132612 133016 . + 1 Alias=Miro_215;ID=Miro_215.CDS;Name=Miro_215;Note=T4 gp68-like;Parent=Miro_215;obsolete_name=Miro_225;product=prohead core protein +Miro GenBank Shine_Dalgarno_sequence 132602 132606 . + 1 ID=Miro_215.RBS;Name=Miro_215;Parent=Miro_215 +Miro feature gene 161360 161654 . + . ID=Miro_260 +Miro GenBank CDS 161373 161654 . + 1 Alias=Miro_260;ID=Miro_260.CDS;Name=Miro_260;Note=T4 NrdC-like;Parent=Miro_260;obsolete_name=Miro_180;product=glutaredoxin +Miro GenBank Shine_Dalgarno_sequence 161360 161363 . + 1 ID=Miro_260.RBS;Name=Miro_260;Parent=Miro_260 +Miro feature gene 161642 161950 . + . ID=Miro_261 +Miro GenBank CDS 161651 161950 . + 1 Alias=Miro_261;ID=Miro_261.CDS;Name=Miro_261;Note=T4 gp55.2-like;Parent=Miro_261;obsolete_name=Miro_179;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 161642 161645 . + 1 ID=Miro_261.RBS;Name=Miro_261;Parent=Miro_261 +Miro feature gene 132347 132603 . + . ID=Miro_214 +Miro GenBank CDS 132361 132603 . + 1 Alias=Miro_214;ID=Miro_214.CDS;Name=Miro_214;Parent=Miro_214;obsolete_name=Miro_226;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 132347 132350 . + 1 ID=Miro_214.RBS;Name=Miro_214;Parent=Miro_214 +Miro feature gene 130777 132361 . + . ID=Miro_213 +Miro GenBank CDS 130787 132361 . + 1 Alias=Miro_213;ID=Miro_213.CDS;Name=Miro_213;Note=T4 gp20-like;Parent=Miro_213;obsolete_name=Miro_227;product=portal protein +Miro GenBank Shine_Dalgarno_sequence 130777 130780 . + 1 ID=Miro_213.RBS;Name=Miro_213;Parent=Miro_213 +Miro feature gene 147698 148234 . + . ID=Miro_238 +Miro GenBank CDS 147710 148234 . + 1 Alias=Miro_238;ID=Miro_238.CDS;Name=Miro_238;Parent=Miro_238;obsolete_name=Miro_202;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 147698 147701 . + 1 ID=Miro_238.RBS;Name=Miro_238;Parent=Miro_238 +Miro feature gene 130235 130731 . + . ID=Miro_212 +Miro GenBank CDS 130246 130731 . + 1 Alias=Miro_212;ID=Miro_212.CDS;Name=Miro_212;Note=T4 gp19-like;Parent=Miro_212;obsolete_name=Miro_228;product=tail tube protein +Miro GenBank Shine_Dalgarno_sequence 130235 130239 . + 1 ID=Miro_212.RBS;Name=Miro_212;Parent=Miro_212 +Miro feature gene 51892 52172 . + . ID=Miro_85 +Miro GenBank CDS 51903 52172 . + 1 Alias=Miro_85;ID=Miro_85.CDS;Name=Miro_85;Parent=Miro_85;obsolete_name=Miro_079;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 51892 51894 . + 1 ID=Miro_85.RBS;Name=Miro_85;Parent=Miro_85 +Miro feature gene 51531 51903 . + . ID=Miro_84 +Miro GenBank CDS 51541 51903 . + 1 Alias=Miro_84;ID=Miro_84.CDS;Name=Miro_84;Note=T4-like%3B contains glycine radical domain;Parent=Miro_84;obsolete_name=Miro_080;product=autonomous glycyl radical cofactor +Miro GenBank Shine_Dalgarno_sequence 51531 51534 . + 1 ID=Miro_84.RBS;Name=Miro_84;Parent=Miro_84 +Miro feature gene 52585 52833 . + . ID=Miro_87 +Miro GenBank CDS 52594 52833 . + 1 Alias=Miro_87;ID=Miro_87.CDS;Name=Miro_87;Parent=Miro_87;obsolete_name=Miro_077;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 52585 52588 . + 1 ID=Miro_87.RBS;Name=Miro_87;Parent=Miro_87 +Miro feature gene 52286 52591 . + . ID=Miro_86 +Miro GenBank CDS 52298 52591 . + 1 Alias=Miro_86;ID=Miro_86.CDS;Name=Miro_86;Parent=Miro_86;obsolete_name=Miro_078;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 52286 52289 . + 1 ID=Miro_86.RBS;Name=Miro_86;Parent=Miro_86 +Miro feature gene 50203 50493 . + . ID=Miro_81 +Miro GenBank CDS 50212 50493 . + 1 Alias=Miro_81;ID=Miro_81.CDS;Name=Miro_81;Parent=Miro_81;obsolete_name=Miro_083;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 50203 50206 . + 1 ID=Miro_81.RBS;Name=Miro_81;Parent=Miro_81 +Miro feature gene 49635 49896 . + . ID=Miro_80 +Miro GenBank CDS 49645 49896 . + 1 Alias=Miro_80;ID=Miro_80.CDS;Name=Miro_80;Parent=Miro_80;obsolete_name=Miro_084;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 49635 49637 . + 1 ID=Miro_80.RBS;Name=Miro_80;Parent=Miro_80 +Miro feature gene 50955 51530 . + . ID=Miro_83 +Miro GenBank CDS 50964 51530 . + 1 Alias=Miro_83;ID=Miro_83.CDS;Name=Miro_83;Parent=Miro_83;obsolete_name=Miro_081;product=hypothetical conserved;tmhelix=1 TMD %289-31%29 N in%2C C out +Miro GenBank Shine_Dalgarno_sequence 50955 50958 . + 1 ID=Miro_83.RBS;Name=Miro_83;Parent=Miro_83 +Miro feature gene 50495 50922 . + . ID=Miro_82 +Miro GenBank CDS 50503 50922 . + 1 Alias=Miro_82;ID=Miro_82.CDS;Name=Miro_82;Parent=Miro_82;obsolete_name=Miro_082;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 50495 50497 . + 1 ID=Miro_82.RBS;Name=Miro_82;Parent=Miro_82 +Miro feature gene 104839 105703 . - . ID=Miro_193 +Miro GenBank CDS 104839 105693 . - 1 ID=Miro_193.CDS;Name=Miro_193;Parent=Miro_193;obsolete_name=Miro_247;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 105699 105703 . - 1 Alias=Miro_193;ID=Miro_193.RBS;Name=Miro_193;Parent=Miro_193 +Miro feature gene 52974 53137 . + . ID=Miro_89 +Miro GenBank CDS 52985 53137 . + 1 Alias=Miro_89;ID=Miro_89.CDS;Name=Miro_89;Parent=Miro_89;obsolete_name=Miro_075;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 52974 52978 . + 1 ID=Miro_89.RBS;Name=Miro_89;Parent=Miro_89 +Miro feature gene 52806 52988 . + . ID=Miro_88 +Miro GenBank CDS 52818 52988 . + 1 Alias=Miro_88;ID=Miro_88.CDS;Name=Miro_88;Parent=Miro_88;obsolete_name=Miro_076;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 52806 52809 . + 1 ID=Miro_88.RBS;Name=Miro_88;Parent=Miro_88 +Miro feature gene 85193 86549 . - . ID=Miro_150 +Miro GenBank CDS 85193 86539 . - 1 ID=Miro_150.CDS;Name=Miro_150;Note=contains PIN domain and P-loop containing nucleoside triphosphate hydrolase;Parent=Miro_150;obsolete_name=Miro_014;product=PhoH-like protein +Miro GenBank Shine_Dalgarno_sequence 86546 86549 . - 1 Alias=Miro_150;ID=Miro_150.RBS;Name=Miro_150;Parent=Miro_150 +Miro feature gene 86549 87082 . - . ID=Miro_151 +Miro GenBank CDS 86549 87073 . - 1 ID=Miro_151.CDS;Name=Miro_151;Note=contains AP2/ERF domain;Parent=Miro_151;obsolete_name=Miro_013;product=HNH endonuclease +Miro GenBank Shine_Dalgarno_sequence 87079 87082 . - 1 Alias=Miro_151;ID=Miro_151.RBS;Name=Miro_151;Parent=Miro_151 +Miro feature gene 87073 87540 . - . ID=Miro_152 +Miro GenBank CDS 87073 87531 . - 1 ID=Miro_152.CDS;Name=Miro_152;Parent=Miro_152;obsolete_name=Miro_012;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 87537 87540 . - 1 Alias=Miro_152;ID=Miro_152.RBS;Name=Miro_152;Parent=Miro_152 +Miro feature gene 87563 87968 . - . ID=Miro_153 +Miro GenBank CDS 87563 87958 . - 1 ID=Miro_153.CDS;Name=Miro_153;Note=D-alanyl-D-alanine carboxypeptidase;Parent=Miro_153;obsolete_name=Miro_011;product=endolysin +Miro GenBank Shine_Dalgarno_sequence 87964 87968 . - 1 Alias=Miro_153;ID=Miro_153.RBS;Name=Miro_153;Parent=Miro_153 +Miro feature gene 88026 88439 . - . ID=Miro_154 +Miro GenBank CDS 88026 88427 . - 1 ID=Miro_154.CDS;Name=Miro_154;Parent=Miro_154;obsolete_name=Miro_010;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 88436 88439 . - 1 Alias=Miro_154;ID=Miro_154.RBS;Name=Miro_154;Parent=Miro_154 +Miro feature gene 88482 88815 . - . ID=Miro_155 +Miro GenBank CDS 88482 88805 . - 1 ID=Miro_155.CDS;Name=Miro_155;Parent=Miro_155;obsolete_name=Miro_009;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 88812 88815 . - 1 Alias=Miro_155;ID=Miro_155.RBS;Name=Miro_155;Parent=Miro_155 +Miro feature gene 88845 89119 . - . ID=Miro_156 +Miro GenBank CDS 88845 89108 . - 1 ID=Miro_156.CDS;Name=Miro_156;Parent=Miro_156;obsolete_name=Miro_008;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 89115 89119 . - 1 Alias=Miro_156;ID=Miro_156.RBS;Name=Miro_156;Parent=Miro_156 +Miro feature gene 89178 89447 . - . ID=Miro_157 +Miro GenBank CDS 89178 89438 . - 1 ID=Miro_157.CDS;Name=Miro_157;Parent=Miro_157;obsolete_name=Miro_007;product=hypothetical conserved;signal=signal peptidase II cleavage site 19-20 +Miro GenBank Shine_Dalgarno_sequence 89445 89447 . - 1 Alias=Miro_157;ID=Miro_157.RBS;Name=Miro_157;Parent=Miro_157 +Miro feature gene 89440 89880 . - . ID=Miro_158 +Miro GenBank CDS 89440 89871 . - 1 ID=Miro_158.CDS;Name=Miro_158;Parent=Miro_158;obsolete_name=Miro_006;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 89878 89880 . - 1 Alias=Miro_158;ID=Miro_158.RBS;Name=Miro_158;Parent=Miro_158 +Miro feature gene 89882 90064 . - . ID=Miro_159 +Miro GenBank CDS 89882 90055 . - 1 ID=Miro_159.CDS;Name=Miro_159;Parent=Miro_159;obsolete_name=Miro_005;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 90061 90064 . - 1 Alias=Miro_159;ID=Miro_159.RBS;Name=Miro_159;Parent=Miro_159 +Miro feature gene 134495 136075 . + . ID=Miro_218 +Miro GenBank CDS 134507 136075 . + 1 Alias=Miro_218;ID=Miro_218.CDS;Name=Miro_218;Note=T4 gp23/gp24-like;Parent=Miro_218;obsolete_name=Miro_222;product=major capsid protein +Miro GenBank Shine_Dalgarno_sequence 134495 134498 . + 1 ID=Miro_218.RBS;Name=Miro_218;Parent=Miro_218 +Miro feature gene 174229 174467 . - . ID=Miro_271 +Miro GenBank CDS 174229 174456 . - 1 ID=Miro_271.CDS;Name=Miro_271;Parent=Miro_271;obsolete_name=Miro_169;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 174464 174467 . - 1 Alias=Miro_271;ID=Miro_271.RBS;Name=Miro_271;Parent=Miro_271 +Miro feature gene 173351 174160 . - . ID=Miro_270 +Miro GenBank CDS 173351 174148 . - 1 ID=Miro_270.CDS;Name=Miro_270;Parent=Miro_270;obsolete_name=Miro_170;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 174156 174160 . - 1 Alias=Miro_270;ID=Miro_270.RBS;Name=Miro_270;Parent=Miro_270 +Miro feature gene 174760 174903 . - . ID=Miro_273 +Miro GenBank CDS 174760 174894 . - 1 ID=Miro_273.CDS;Name=Miro_273;Parent=Miro_273;obsolete_name=Miro_167;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 174900 174903 . - 1 Alias=Miro_273;ID=Miro_273.RBS;Name=Miro_273;Parent=Miro_273 +Miro feature gene 174453 174796 . - . ID=Miro_272 +Miro GenBank CDS 174453 174785 . - 1 ID=Miro_272.CDS;Name=Miro_272;Parent=Miro_272;obsolete_name=Miro_168;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 174793 174796 . - 1 Alias=Miro_272;ID=Miro_272.RBS;Name=Miro_272;Parent=Miro_272 +Miro feature gene 175224 175675 . - . ID=Miro_275 +Miro GenBank CDS 175224 175661 . - 1 ID=Miro_275.CDS;Name=Miro_275;Parent=Miro_275;obsolete_name=Miro_165;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 175673 175675 . - 1 Alias=Miro_275;ID=Miro_275.RBS;Name=Miro_275;Parent=Miro_275 +Miro feature gene 174939 175197 . - . ID=Miro_274 +Miro GenBank CDS 174939 175187 . - 1 ID=Miro_274.CDS;Name=Miro_274;Note=contains FCH and colicin domains;Parent=Miro_274;obsolete_name=Miro_166;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 175195 175197 . - 1 Alias=Miro_274;ID=Miro_274.RBS;Name=Miro_274;Parent=Miro_274 +Miro feature gene 175636 176021 . - . ID=Miro_276 +Miro GenBank CDS 175636 176010 . - 1 ID=Miro_276.CDS;Name=Miro_276;Parent=Miro_276;obsolete_name=Miro_164;product=hypothetical conserved;tmhelix=2TMDs %2844-66%2C 76-98%29 N in%2C C in +Miro GenBank Shine_Dalgarno_sequence 176017 176021 . - 1 Alias=Miro_276;ID=Miro_276.RBS;Name=Miro_276;Parent=Miro_276 +Miro feature gene 82146 82479 . - . ID=Miro_144 +Miro GenBank CDS 82146 82469 . - 1 ID=Miro_144.CDS;Name=Miro_144;Parent=Miro_144;obsolete_name=Miro_020;product=hypothetical conserved;signal=signal peptidase I cleavage site 17-18 +Miro GenBank Shine_Dalgarno_sequence 82476 82479 . - 1 Alias=Miro_144;ID=Miro_144.RBS;Name=Miro_144;Parent=Miro_144 +Miro feature gene 11178 11471 . - . ID=Miro_18 +Miro GenBank CDS 11178 11459 . - 1 ID=Miro_18.CDS;Name=Miro_18;Note=contains LysM domain;Parent=Miro_18;obsolete_name=Miro_146;product=peptidoglycan-binding protein +Miro GenBank Shine_Dalgarno_sequence 11468 11471 . - 1 Alias=Miro_18;ID=Miro_18.RBS;Name=Miro_18;Parent=Miro_18 +Miro GenBank CDS 11456 11731 . - 1 ID=Miro_19;Name=Miro_19;obsolete_name=Miro_145;product=hypothetical conserved +Miro feature gene 9399 9740 . - . ID=Miro_12 +Miro GenBank CDS 9399 9728 . - 1 ID=Miro_12.CDS;Name=Miro_12;Parent=Miro_12;obsolete_name=Miro_152;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 9736 9740 . - 1 Alias=Miro_12;ID=Miro_12.RBS;Name=Miro_12;Parent=Miro_12 +Miro feature gene 9788 10025 . - . ID=Miro_13 +Miro GenBank CDS 9788 10012 . - 1 ID=Miro_13.CDS;Name=Miro_13;Parent=Miro_13;obsolete_name=Miro_151;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 10021 10025 . - 1 Alias=Miro_13;ID=Miro_13.RBS;Name=Miro_13;Parent=Miro_13 +Miro feature gene 8488 8779 . - . ID=Miro_10 +Miro GenBank CDS 8488 8766 . - 1 ID=Miro_10.CDS;Name=Miro_10;Parent=Miro_10;obsolete_name=Miro_154;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 8776 8779 . - 1 Alias=Miro_10;ID=Miro_10.RBS;Name=Miro_10;Parent=Miro_10 +Miro feature gene 8763 9370 . - . ID=Miro_11 +Miro GenBank CDS 8763 9359 . - 1 ID=Miro_11.CDS;Name=Miro_11;Parent=Miro_11;obsolete_name=Miro_153;product=hypothetical conserved;tmhelix=1 TMD %2810-29%29 N out%2C C in +Miro GenBank Shine_Dalgarno_sequence 9367 9370 . - 1 Alias=Miro_11;ID=Miro_11.RBS;Name=Miro_11;Parent=Miro_11 +Miro feature gene 10737 10970 . - . ID=Miro_16 +Miro GenBank CDS 10737 10961 . - 1 ID=Miro_16.CDS;Name=Miro_16;Parent=Miro_16;obsolete_name=Miro_148;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 10967 10970 . - 1 Alias=Miro_16;ID=Miro_16.RBS;Name=Miro_16;Parent=Miro_16 +Miro feature gene 10965 11125 . - . ID=Miro_17 +Miro GenBank CDS 10965 11114 . - 1 ID=Miro_17.CDS;Name=Miro_17;Parent=Miro_17;obsolete_name=Miro_147;product=hypothetical conserved;tmhelix=1 TMD %2810-32%29 N out%2C C in +Miro GenBank Shine_Dalgarno_sequence 11121 11125 . - 1 Alias=Miro_17;ID=Miro_17.RBS;Name=Miro_17;Parent=Miro_17 +Miro feature gene 10086 10361 . - . ID=Miro_14 +Miro GenBank CDS 10086 10349 . - 1 ID=Miro_14.CDS;Name=Miro_14;Parent=Miro_14;obsolete_name=Miro_150;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 10358 10361 . - 1 Alias=Miro_14;ID=Miro_14.RBS;Name=Miro_14;Parent=Miro_14 +Miro feature gene 10438 10746 . - . ID=Miro_15 +Miro GenBank CDS 10438 10737 . - 1 ID=Miro_15.CDS;Name=Miro_15;Parent=Miro_15;obsolete_name=Miro_149;product=hypothetical conserved;tmhelix=1 TMD %284-21%29 N out%2C C in +Miro GenBank Shine_Dalgarno_sequence 10743 10746 . - 1 Alias=Miro_15;ID=Miro_15.RBS;Name=Miro_15;Parent=Miro_15 +Miro feature gene 53914 54144 . + . ID=Miro_92 +Miro GenBank CDS 53923 54144 . + 1 Alias=Miro_92;ID=Miro_92.CDS;Name=Miro_92;Parent=Miro_92;obsolete_name=Miro_072;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 53914 53916 . + 1 ID=Miro_92.RBS;Name=Miro_92;Parent=Miro_92 +Miro feature gene 54130 54755 . + . ID=Miro_93 +Miro GenBank CDS 54141 54755 . + 1 Alias=Miro_93;ID=Miro_93.CDS;Name=Miro_93;Note=contains haloacid dehydrogenase %28HAD%29-like domain;Parent=Miro_93;obsolete_name=Miro_071;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 54130 54134 . + 1 ID=Miro_93.RBS;Name=Miro_93;Parent=Miro_93 +Miro feature gene 53212 53661 . + . ID=Miro_90 +Miro GenBank CDS 53221 53661 . + 1 Alias=Miro_90;ID=Miro_90.CDS;Name=Miro_90;Note=T4 Y12G-like;Parent=Miro_90;obsolete_name=Miro_074;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 53212 53215 . + 1 ID=Miro_90.RBS;Name=Miro_90;Parent=Miro_90 +Miro feature gene 53646 53921 . + . ID=Miro_91 +Miro GenBank CDS 53658 53921 . + 1 Alias=Miro_91;ID=Miro_91.CDS;Name=Miro_91;Parent=Miro_91;obsolete_name=Miro_073;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 53646 53648 . + 1 ID=Miro_91.RBS;Name=Miro_91;Parent=Miro_91 +Miro feature gene 56987 57203 . + . ID=Miro_96 +Miro GenBank CDS 57000 57203 . + 1 Alias=Miro_96;ID=Miro_96.CDS;Name=Miro_96;Parent=Miro_96;obsolete_name=Miro_068;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 56987 56990 . + 1 ID=Miro_96.RBS;Name=Miro_96;Parent=Miro_96 +Miro feature gene 57193 57382 . + . ID=Miro_97 +Miro GenBank CDS 57206 57382 . + 1 Alias=Miro_97;ID=Miro_97.CDS;Name=Miro_97;Parent=Miro_97;obsolete_name=Miro_067;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 57193 57195 . + 1 ID=Miro_97.RBS;Name=Miro_97;Parent=Miro_97 +Miro feature gene 54726 56265 . + . ID=Miro_94 +Miro GenBank CDS 54736 56265 . + 1 Alias=Miro_94;ID=Miro_94.CDS;Name=Miro_94;Note=T4-like;Parent=Miro_94;obsolete_name=Miro_070;product=DNA ligase +Miro GenBank Shine_Dalgarno_sequence 54726 54728 . + 1 ID=Miro_94.RBS;Name=Miro_94;Parent=Miro_94 +Miro feature gene 56331 56911 . + . ID=Miro_95 +Miro GenBank CDS 56342 56911 . + 1 Alias=Miro_95;ID=Miro_95.CDS;Name=Miro_95;Parent=Miro_95;obsolete_name=Miro_069;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 56331 56333 . + 1 ID=Miro_95.RBS;Name=Miro_95;Parent=Miro_95 +Miro feature gene 57368 57543 . + . ID=Miro_98 +Miro GenBank CDS 57379 57543 . + 1 Alias=Miro_98;ID=Miro_98.CDS;Name=Miro_98;Parent=Miro_98;obsolete_name=Miro_066;product=hypothetical conserved;tmhelix=2TMDs %287-26%2C 31-53%29 N in%2C C in +Miro GenBank Shine_Dalgarno_sequence 57368 57372 . + 1 ID=Miro_98.RBS;Name=Miro_98;Parent=Miro_98 +Miro feature gene 57613 57914 . + . ID=Miro_99 +Miro GenBank CDS 57624 57914 . + 1 Alias=Miro_99;ID=Miro_99.CDS;Name=Miro_99;Parent=Miro_99;obsolete_name=Miro_065;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 57613 57616 . + 1 ID=Miro_99.RBS;Name=Miro_99;Parent=Miro_99 +Miro feature gene 81924 82086 . - . ID=Miro_143 +Miro GenBank CDS 81924 82079 . - 1 ID=Miro_143.CDS;Name=Miro_143;Parent=Miro_143;obsolete_name=Miro_021;product=hypothetical conserved;tmhelix=1 TMD %2815-37%29 N out%2C C in +Miro GenBank Shine_Dalgarno_sequence 82084 82086 . - 1 Alias=Miro_143;ID=Miro_143.RBS;Name=Miro_143;Parent=Miro_143 +Miro feature gene 67179 67658 . - . ID=Miro_114 +Miro GenBank CDS 67179 67649 . - 1 ID=Miro_114.CDS;Name=Miro_114;Parent=Miro_114;obsolete_name=Miro_050;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 67656 67658 . - 1 Alias=Miro_114;ID=Miro_114.RBS;Name=Miro_114;Parent=Miro_114 +Miro feature gene 81366 81851 . - . ID=Miro_141 +Miro GenBank CDS 81366 81839 . - 1 ID=Miro_141.CDS;Name=Miro_141;Note=contains macro domain;Parent=Miro_141;obsolete_name=Miro_023;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 81849 81851 . - 1 Alias=Miro_141;ID=Miro_141.RBS;Name=Miro_141;Parent=Miro_141 +Miro feature gene 81076 81376 . - . ID=Miro_140 +Miro GenBank CDS 81076 81363 . - 1 ID=Miro_140.CDS;Name=Miro_140;Parent=Miro_140;obsolete_name=Miro_024;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 81374 81376 . - 1 Alias=Miro_140;ID=Miro_140.RBS;Name=Miro_140;Parent=Miro_140 +Miro feature gene 83223 83630 . - . ID=Miro_147 +Miro GenBank CDS 83223 83618 . - 1 ID=Miro_147.CDS;Name=Miro_147;Parent=Miro_147;obsolete_name=Miro_017;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 83627 83630 . - 1 Alias=Miro_147;ID=Miro_147.RBS;Name=Miro_147;Parent=Miro_147 +Miro feature gene 83066 83224 . - . ID=Miro_146 +Miro GenBank CDS 83066 83212 . - 1 ID=Miro_146.CDS;Name=Miro_146;Parent=Miro_146;obsolete_name=Miro_018;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 83221 83224 . - 1 Alias=Miro_146;ID=Miro_146.RBS;Name=Miro_146;Parent=Miro_146 +Miro feature gene 82479 83083 . - . ID=Miro_145 +Miro GenBank CDS 82479 83069 . - 1 ID=Miro_145.CDS;Name=Miro_145;Parent=Miro_145;obsolete_name=Miro_019;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 83080 83083 . - 1 Alias=Miro_145;ID=Miro_145.RBS;Name=Miro_145;Parent=Miro_145 +Miro feature gene 67646 67816 . - . ID=Miro_115 +Miro GenBank CDS 67646 67804 . - 1 ID=Miro_115.CDS;Name=Miro_115;Parent=Miro_115;obsolete_name=Miro_049;product=hypothetical conserved;tmhelix=2TMDs %282-21%2C 31-50%29 N in%2C C in +Miro GenBank Shine_Dalgarno_sequence 67814 67816 . - 1 Alias=Miro_115;ID=Miro_115.RBS;Name=Miro_115;Parent=Miro_115 +Miro feature gene 84392 84959 . - . ID=Miro_149 +Miro GenBank CDS 84392 84946 . - 1 ID=Miro_149.CDS;Name=Miro_149;Parent=Miro_149;obsolete_name=Miro_015;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 84955 84959 . - 1 Alias=Miro_149;ID=Miro_149.RBS;Name=Miro_149;Parent=Miro_149 +Miro feature gene 83686 84337 . - . ID=Miro_148 +Miro GenBank CDS 83686 84327 . - 1 ID=Miro_148.CDS;Name=Miro_148;Note=T4 RegB-like;Parent=Miro_148;obsolete_name=Miro_016;product=endoribonuclease;signal=signal peptidase II cleavage site 12-13 +Miro GenBank Shine_Dalgarno_sequence 84334 84337 . - 1 Alias=Miro_148;ID=Miro_148.RBS;Name=Miro_148;Parent=Miro_148 +Miro feature gene 67801 68461 . - . ID=Miro_116 +Miro GenBank CDS 67801 68451 . - 1 ID=Miro_116.CDS;Name=Miro_116;Parent=Miro_116;obsolete_name=Miro_048;product=hypothetical conserved +Miro GenBank Shine_Dalgarno_sequence 68457 68461 . - 1 Alias=Miro_116;ID=Miro_116.RBS;Name=Miro_116;Parent=Miro_116
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cpt_gff_add_parent/test-data/T7_AddParentIn.gff3 Fri May 13 04:54:17 2022 +0000 @@ -0,0 +1,3369 @@ +##gff-version 3 +NC_001604 getOrfsOrCds CDS 481 600 . + 0 ID=ORF.0.1 +NC_001604 getOrfsOrCds CDS 925 1278 . + 0 ID=ORF.0.2 +NC_001604 getOrfsOrCds CDS 931 1278 . + 0 ID=ORF.0.3 +NC_001604 getOrfsOrCds CDS 940 1278 . + 0 ID=ORF.0.4 +NC_001604 getOrfsOrCds CDS 976 1278 . + 0 ID=ORF.0.5 +NC_001604 getOrfsOrCds CDS 979 1278 . + 0 ID=ORF.0.6 +NC_001604 getOrfsOrCds CDS 991 1278 . + 0 ID=ORF.0.7 +NC_001604 getOrfsOrCds CDS 1006 1278 . + 0 ID=ORF.0.8 +NC_001604 getOrfsOrCds CDS 1024 1278 . + 0 ID=ORF.0.9 +NC_001604 getOrfsOrCds CDS 1036 1278 . + 0 ID=ORF.0.10 +NC_001604 getOrfsOrCds CDS 1042 1278 . + 0 ID=ORF.0.11 +NC_001604 getOrfsOrCds CDS 1081 1278 . + 0 ID=ORF.0.12 +NC_001604 getOrfsOrCds CDS 1093 1278 . + 0 ID=ORF.0.13 +NC_001604 getOrfsOrCds CDS 1108 1278 . + 0 ID=ORF.0.14 +NC_001604 getOrfsOrCds CDS 1135 1278 . + 0 ID=ORF.0.15 +NC_001604 getOrfsOrCds CDS 1138 1278 . + 0 ID=ORF.0.16 +NC_001604 getOrfsOrCds CDS 1159 1278 . + 0 ID=ORF.0.17 +NC_001604 getOrfsOrCds CDS 1165 1278 . + 0 ID=ORF.0.18 +NC_001604 getOrfsOrCds CDS 1168 1278 . + 0 ID=ORF.0.19 +NC_001604 getOrfsOrCds CDS 1180 1278 . + 0 ID=ORF.0.20 +NC_001604 getOrfsOrCds CDS 1318 1413 . + 0 ID=ORF.0.21 +NC_001604 getOrfsOrCds CDS 1549 1797 . + 0 ID=ORF.0.22 +NC_001604 getOrfsOrCds CDS 1597 1797 . + 0 ID=ORF.0.23 +NC_001604 getOrfsOrCds CDS 1636 1797 . + 0 ID=ORF.0.24 +NC_001604 getOrfsOrCds CDS 1639 1797 . + 0 ID=ORF.0.25 +NC_001604 getOrfsOrCds CDS 1654 1797 . + 0 ID=ORF.0.26 +NC_001604 getOrfsOrCds CDS 1660 1797 . + 0 ID=ORF.0.27 +NC_001604 getOrfsOrCds CDS 1708 1797 . + 0 ID=ORF.0.28 +NC_001604 getOrfsOrCds CDS 1834 1998 . + 0 ID=ORF.0.29 +NC_001604 getOrfsOrCds CDS 1864 1998 . + 0 ID=ORF.0.30 +NC_001604 getOrfsOrCds CDS 3286 3414 . + 0 ID=ORF.0.31 +NC_001604 getOrfsOrCds CDS 3292 3414 . + 0 ID=ORF.0.32 +NC_001604 getOrfsOrCds CDS 3310 3414 . + 0 ID=ORF.0.33 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CDS 30324 30458 . + 0 ID=ORF.0.1958 +NC_001604 getOrfsOrCds CDS 30477 30572 . + 0 ID=ORF.0.1959 +NC_001604 getOrfsOrCds CDS 36813 36905 . + 0 ID=ORF.0.1960 +NC_001604 getOrfsOrCds CDS 37032 37283 . + 0 ID=ORF.0.1961 +NC_001604 getOrfsOrCds CDS 37050 37283 . + 0 ID=ORF.0.1962 +NC_001604 getOrfsOrCds CDS 37056 37283 . + 0 ID=ORF.0.1963 +NC_001604 getOrfsOrCds CDS 37083 37283 . + 0 ID=ORF.0.1964 +NC_001604 getOrfsOrCds CDS 37092 37283 . + 0 ID=ORF.0.1965 +NC_001604 getOrfsOrCds CDS 37101 37283 . + 0 ID=ORF.0.1966 +NC_001604 getOrfsOrCds CDS 37113 37283 . + 0 ID=ORF.0.1967 +NC_001604 getOrfsOrCds CDS 37134 37283 . + 0 ID=ORF.0.1968 +NC_001604 getOrfsOrCds CDS 37137 37283 . + 0 ID=ORF.0.1969 +NC_001604 getOrfsOrCds CDS 37149 37283 . + 0 ID=ORF.0.1970 +NC_001604 getOrfsOrCds CDS 37152 37283 . + 0 ID=ORF.0.1971 +NC_001604 getOrfsOrCds CDS 37167 37283 . + 0 ID=ORF.0.1972 +NC_001604 getOrfsOrCds CDS 37293 37403 . + 0 ID=ORF.0.1973 +NC_001604 getOrfsOrCds CDS 37308 37403 . + 0 ID=ORF.0.1974 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. + 0 ID=ORF.0.1991 +NC_001604 getOrfsOrCds CDS 38091 38273 . + 0 ID=ORF.0.1992 +NC_001604 getOrfsOrCds CDS 38109 38273 . + 0 ID=ORF.0.1993 +NC_001604 getOrfsOrCds CDS 38118 38273 . + 0 ID=ORF.0.1994 +NC_001604 getOrfsOrCds CDS 38127 38273 . + 0 ID=ORF.0.1995 +NC_001604 getOrfsOrCds CDS 38136 38273 . + 0 ID=ORF.0.1996 +NC_001604 getOrfsOrCds CDS 38139 38273 . + 0 ID=ORF.0.1997 +NC_001604 getOrfsOrCds CDS 38166 38273 . + 0 ID=ORF.0.1998 +NC_001604 getOrfsOrCds CDS 38172 38273 . + 0 ID=ORF.0.1999 +NC_001604 getOrfsOrCds CDS 38175 38273 . + 0 ID=ORF.0.2000 +NC_001604 getOrfsOrCds CDS 38325 38513 . + 0 ID=ORF.0.2001 +NC_001604 getOrfsOrCds CDS 38358 38513 . + 0 ID=ORF.0.2002 +NC_001604 getOrfsOrCds CDS 38376 38513 . + 0 ID=ORF.0.2003 +NC_001604 getOrfsOrCds CDS 38388 38513 . + 0 ID=ORF.0.2004 +NC_001604 getOrfsOrCds CDS 38391 38513 . + 0 ID=ORF.0.2005 +NC_001604 getOrfsOrCds CDS 38400 38513 . + 0 ID=ORF.0.2006 +NC_001604 getOrfsOrCds CDS 38412 38513 . + 0 ID=ORF.0.2007 +NC_001604 getOrfsOrCds CDS 38538 38726 . + 0 ID=ORF.0.2008 +NC_001604 getOrfsOrCds CDS 38550 38726 . + 0 ID=ORF.0.2009 +NC_001604 getOrfsOrCds CDS 38553 38726 . + 0 ID=ORF.0.2010 +NC_001604 getOrfsOrCds CDS 38565 38726 . + 0 ID=ORF.0.2011 +NC_001604 getOrfsOrCds CDS 38574 38726 . + 0 ID=ORF.0.2012 +NC_001604 getOrfsOrCds CDS 38619 38726 . + 0 ID=ORF.0.2013 +NC_001604 getOrfsOrCds CDS 39036 39152 . + 0 ID=ORF.0.2014 +NC_001604 getOrfsOrCds CDS 39039 39152 . + 0 ID=ORF.0.2015 +NC_001604 getOrfsOrCds CDS 39048 39152 . + 0 ID=ORF.0.2016 +NC_001604 getOrfsOrCds CDS 39054 39152 . + 0 ID=ORF.0.2017 +NC_001604 getOrfsOrCds CDS 39063 39152 . + 0 ID=ORF.0.2018 +NC_001604 getOrfsOrCds CDS 39420 39557 . + 0 ID=ORF.0.2019 +NC_001604 getOrfsOrCds CDS 39441 39557 . + 0 ID=ORF.0.2020 +NC_001604 getOrfsOrCds CDS 39453 39557 . + 0 ID=ORF.0.2021 +NC_001604 getOrfsOrCds CDS 39456 39557 . + 0 ID=ORF.0.2022 +NC_001604 getOrfsOrCds CDS 39462 39557 . + 0 ID=ORF.0.2023 +NC_001604 getOrfsOrCds CDS 39771 39875 . + 0 ID=ORF.0.2024 +NC_001604 getOrfsOrCds CDS 39777 39875 . + 0 ID=ORF.0.2025 +NC_001604 getOrfsOrCds CDS 39713 39847 . - 0 ID=ORF.0.2026 +NC_001604 getOrfsOrCds CDS 39713 39829 . - 0 ID=ORF.0.2027 +NC_001604 getOrfsOrCds CDS 39494 39610 . - 0 ID=ORF.0.2028 +NC_001604 getOrfsOrCds CDS 39494 39604 . - 0 ID=ORF.0.2029 +NC_001604 getOrfsOrCds CDS 39494 39586 . - 0 ID=ORF.0.2030 +NC_001604 getOrfsOrCds CDS 39494 39583 . - 0 ID=ORF.0.2031 +NC_001604 getOrfsOrCds CDS 38933 39163 . - 0 ID=ORF.0.2032 +NC_001604 getOrfsOrCds CDS 38933 39160 . - 0 ID=ORF.0.2033 +NC_001604 getOrfsOrCds CDS 38933 39139 . - 0 ID=ORF.0.2034 +NC_001604 getOrfsOrCds CDS 38933 39097 . - 0 ID=ORF.0.2035 +NC_001604 getOrfsOrCds CDS 38933 39079 . - 0 ID=ORF.0.2036 +NC_001604 getOrfsOrCds CDS 38933 39049 . - 0 ID=ORF.0.2037 +NC_001604 getOrfsOrCds CDS 38579 38923 . - 0 ID=ORF.0.2038 +NC_001604 getOrfsOrCds CDS 38579 38911 . - 0 ID=ORF.0.2039 +NC_001604 getOrfsOrCds CDS 38579 38908 . - 0 ID=ORF.0.2040 +NC_001604 getOrfsOrCds 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. - 0 ID=ORF.0.2074 +NC_001604 getOrfsOrCds CDS 33800 33895 . - 0 ID=ORF.0.2075 +NC_001604 getOrfsOrCds CDS 33431 33523 . - 0 ID=ORF.0.2076 +NC_001604 getOrfsOrCds CDS 33431 33520 . - 0 ID=ORF.0.2077 +NC_001604 getOrfsOrCds CDS 32825 32923 . - 0 ID=ORF.0.2078 +NC_001604 getOrfsOrCds CDS 32513 32677 . - 0 ID=ORF.0.2079 +NC_001604 getOrfsOrCds CDS 32513 32602 . - 0 ID=ORF.0.2080 +NC_001604 getOrfsOrCds CDS 32213 32323 . - 0 ID=ORF.0.2081 +NC_001604 getOrfsOrCds CDS 31877 32059 . - 0 ID=ORF.0.2082 +NC_001604 getOrfsOrCds CDS 31877 32050 . - 0 ID=ORF.0.2083 +NC_001604 getOrfsOrCds CDS 31877 32005 . - 0 ID=ORF.0.2084 +NC_001604 getOrfsOrCds CDS 31877 32002 . - 0 ID=ORF.0.2085 +NC_001604 getOrfsOrCds CDS 31661 31804 . - 0 ID=ORF.0.2086 +NC_001604 getOrfsOrCds CDS 31661 31792 . - 0 ID=ORF.0.2087 +NC_001604 getOrfsOrCds CDS 31661 31750 . - 0 ID=ORF.0.2088 +NC_001604 getOrfsOrCds CDS 31040 31165 . - 0 ID=ORF.0.2089 +NC_001604 getOrfsOrCds CDS 31040 31144 . - 0 ID=ORF.0.2090 +NC_001604 getOrfsOrCds CDS 30569 30712 . - 0 ID=ORF.0.2091 +NC_001604 getOrfsOrCds CDS 30569 30709 . - 0 ID=ORF.0.2092 +NC_001604 getOrfsOrCds CDS 30569 30706 . - 0 ID=ORF.0.2093 +NC_001604 getOrfsOrCds CDS 30569 30703 . - 0 ID=ORF.0.2094 +NC_001604 getOrfsOrCds CDS 30383 30535 . - 0 ID=ORF.0.2095 +NC_001604 getOrfsOrCds CDS 30224 30358 . - 0 ID=ORF.0.2096 +NC_001604 getOrfsOrCds CDS 30224 30322 . - 0 ID=ORF.0.2097 +NC_001604 getOrfsOrCds CDS 30224 30316 . - 0 ID=ORF.0.2098 +NC_001604 getOrfsOrCds CDS 30035 30205 . - 0 ID=ORF.0.2099 +NC_001604 getOrfsOrCds CDS 30035 30196 . - 0 ID=ORF.0.2100 +NC_001604 getOrfsOrCds CDS 30035 30172 . - 0 ID=ORF.0.2101 +NC_001604 getOrfsOrCds CDS 30035 30160 . - 0 ID=ORF.0.2102 +NC_001604 getOrfsOrCds CDS 30035 30157 . - 0 ID=ORF.0.2103 +NC_001604 getOrfsOrCds CDS 29864 29998 . - 0 ID=ORF.0.2104 +NC_001604 getOrfsOrCds CDS 29864 29974 . - 0 ID=ORF.0.2105 +NC_001604 getOrfsOrCds CDS 29864 29971 . - 0 ID=ORF.0.2106 +NC_001604 getOrfsOrCds CDS 29864 29959 . - 0 ID=ORF.0.2107 +NC_001604 getOrfsOrCds CDS 29525 29740 . - 0 ID=ORF.0.2108 +NC_001604 getOrfsOrCds CDS 29525 29677 . - 0 ID=ORF.0.2109 +NC_001604 getOrfsOrCds CDS 29525 29653 . - 0 ID=ORF.0.2110 +NC_001604 getOrfsOrCds CDS 28520 29314 . - 0 ID=ORF.0.2111 +NC_001604 getOrfsOrCds CDS 28520 29281 . - 0 ID=ORF.0.2112 +NC_001604 getOrfsOrCds CDS 28520 29251 . - 0 ID=ORF.0.2113 +NC_001604 getOrfsOrCds CDS 28520 29248 . - 0 ID=ORF.0.2114 +NC_001604 getOrfsOrCds CDS 28520 29218 . - 0 ID=ORF.0.2115 +NC_001604 getOrfsOrCds CDS 28520 29209 . - 0 ID=ORF.0.2116 +NC_001604 getOrfsOrCds CDS 28520 29182 . - 0 ID=ORF.0.2117 +NC_001604 getOrfsOrCds CDS 28520 29062 . - 0 ID=ORF.0.2118 +NC_001604 getOrfsOrCds CDS 28520 29050 . - 0 ID=ORF.0.2119 +NC_001604 getOrfsOrCds CDS 28520 29041 . - 0 ID=ORF.0.2120 +NC_001604 getOrfsOrCds CDS 28520 29035 . - 0 ID=ORF.0.2121 +NC_001604 getOrfsOrCds CDS 28520 28996 . - 0 ID=ORF.0.2122 +NC_001604 getOrfsOrCds CDS 28520 28954 . - 0 ID=ORF.0.2123 +NC_001604 getOrfsOrCds CDS 28520 28945 . - 0 ID=ORF.0.2124 +NC_001604 getOrfsOrCds CDS 28520 28897 . - 0 ID=ORF.0.2125 +NC_001604 getOrfsOrCds CDS 28520 28891 . - 0 ID=ORF.0.2126 +NC_001604 getOrfsOrCds CDS 28520 28888 . - 0 ID=ORF.0.2127 +NC_001604 getOrfsOrCds CDS 28520 28873 . - 0 ID=ORF.0.2128 +NC_001604 getOrfsOrCds CDS 28520 28870 . - 0 ID=ORF.0.2129 +NC_001604 getOrfsOrCds CDS 28520 28861 . - 0 ID=ORF.0.2130 +NC_001604 getOrfsOrCds CDS 28520 28816 . - 0 ID=ORF.0.2131 +NC_001604 getOrfsOrCds CDS 28520 28813 . - 0 ID=ORF.0.2132 +NC_001604 getOrfsOrCds CDS 28520 28810 . - 0 ID=ORF.0.2133 +NC_001604 getOrfsOrCds CDS 28520 28783 . - 0 ID=ORF.0.2134 +NC_001604 getOrfsOrCds CDS 28520 28756 . - 0 ID=ORF.0.2135 +NC_001604 getOrfsOrCds CDS 28520 28744 . - 0 ID=ORF.0.2136 +NC_001604 getOrfsOrCds CDS 28520 28738 . - 0 ID=ORF.0.2137 +NC_001604 getOrfsOrCds CDS 28520 28690 . - 0 ID=ORF.0.2138 +NC_001604 getOrfsOrCds CDS 28520 28678 . - 0 ID=ORF.0.2139 +NC_001604 getOrfsOrCds CDS 28520 28666 . - 0 ID=ORF.0.2140 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. - 0 ID=ORF.0.2157 +NC_001604 getOrfsOrCds CDS 26594 26899 . - 0 ID=ORF.0.2158 +NC_001604 getOrfsOrCds CDS 26594 26872 . - 0 ID=ORF.0.2159 +NC_001604 getOrfsOrCds CDS 26594 26794 . - 0 ID=ORF.0.2160 +NC_001604 getOrfsOrCds CDS 26594 26776 . - 0 ID=ORF.0.2161 +NC_001604 getOrfsOrCds CDS 26594 26752 . - 0 ID=ORF.0.2162 +NC_001604 getOrfsOrCds CDS 26594 26707 . - 0 ID=ORF.0.2163 +NC_001604 getOrfsOrCds CDS 26594 26692 . - 0 ID=ORF.0.2164 +NC_001604 getOrfsOrCds CDS 26156 26293 . - 0 ID=ORF.0.2165 +NC_001604 getOrfsOrCds CDS 26156 26275 . - 0 ID=ORF.0.2166 +NC_001604 getOrfsOrCds CDS 26156 26272 . - 0 ID=ORF.0.2167 +NC_001604 getOrfsOrCds CDS 26156 26254 . - 0 ID=ORF.0.2168 +NC_001604 getOrfsOrCds CDS 25913 26002 . - 0 ID=ORF.0.2169 +NC_001604 getOrfsOrCds CDS 25439 25693 . - 0 ID=ORF.0.2170 +NC_001604 getOrfsOrCds CDS 25439 25681 . - 0 ID=ORF.0.2171 +NC_001604 getOrfsOrCds CDS 25439 25678 . - 0 ID=ORF.0.2172 +NC_001604 getOrfsOrCds CDS 25439 25621 . - 0 ID=ORF.0.2173 +NC_001604 getOrfsOrCds CDS 25439 25597 . - 0 ID=ORF.0.2174 +NC_001604 getOrfsOrCds CDS 25439 25588 . - 0 ID=ORF.0.2175 +NC_001604 getOrfsOrCds CDS 25439 25567 . - 0 ID=ORF.0.2176 +NC_001604 getOrfsOrCds CDS 25439 25552 . - 0 ID=ORF.0.2177 +NC_001604 getOrfsOrCds CDS 25439 25528 . - 0 ID=ORF.0.2178 +NC_001604 getOrfsOrCds CDS 25334 25423 . - 0 ID=ORF.0.2179 +NC_001604 getOrfsOrCds CDS 25019 25246 . - 0 ID=ORF.0.2180 +NC_001604 getOrfsOrCds CDS 25019 25213 . - 0 ID=ORF.0.2181 +NC_001604 getOrfsOrCds CDS 25019 25174 . - 0 ID=ORF.0.2182 +NC_001604 getOrfsOrCds CDS 25019 25141 . - 0 ID=ORF.0.2183 +NC_001604 getOrfsOrCds CDS 25019 25132 . - 0 ID=ORF.0.2184 +NC_001604 getOrfsOrCds CDS 24659 24754 . - 0 ID=ORF.0.2185 +NC_001604 getOrfsOrCds CDS 24224 24388 . - 0 ID=ORF.0.2186 +NC_001604 getOrfsOrCds CDS 24224 24376 . - 0 ID=ORF.0.2187 +NC_001604 getOrfsOrCds CDS 24224 24373 . - 0 ID=ORF.0.2188 +NC_001604 getOrfsOrCds CDS 24224 24370 . - 0 ID=ORF.0.2189 +NC_001604 getOrfsOrCds CDS 24224 24364 . - 0 ID=ORF.0.2190 +NC_001604 getOrfsOrCds CDS 23441 24022 . - 0 ID=ORF.0.2191 +NC_001604 getOrfsOrCds CDS 23441 23953 . - 0 ID=ORF.0.2192 +NC_001604 getOrfsOrCds CDS 23441 23926 . - 0 ID=ORF.0.2193 +NC_001604 getOrfsOrCds CDS 23441 23917 . - 0 ID=ORF.0.2194 +NC_001604 getOrfsOrCds CDS 23441 23848 . - 0 ID=ORF.0.2195 +NC_001604 getOrfsOrCds CDS 23441 23806 . - 0 ID=ORF.0.2196 +NC_001604 getOrfsOrCds CDS 23441 23791 . - 0 ID=ORF.0.2197 +NC_001604 getOrfsOrCds CDS 23441 23776 . - 0 ID=ORF.0.2198 +NC_001604 getOrfsOrCds CDS 23441 23770 . - 0 ID=ORF.0.2199 +NC_001604 getOrfsOrCds CDS 23441 23722 . - 0 ID=ORF.0.2200 +NC_001604 getOrfsOrCds CDS 23441 23602 . - 0 ID=ORF.0.2201 +NC_001604 getOrfsOrCds CDS 23441 23563 . - 0 ID=ORF.0.2202 +NC_001604 getOrfsOrCds CDS 22886 23425 . - 0 ID=ORF.0.2203 +NC_001604 getOrfsOrCds CDS 22886 23422 . - 0 ID=ORF.0.2204 +NC_001604 getOrfsOrCds CDS 22886 23371 . - 0 ID=ORF.0.2205 +NC_001604 getOrfsOrCds CDS 22886 23341 . - 0 ID=ORF.0.2206 +NC_001604 getOrfsOrCds 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getOrfsOrCds CDS 9140 9325 . - 0 ID=ORF.0.2407 +NC_001604 getOrfsOrCds CDS 9140 9313 . - 0 ID=ORF.0.2408 +NC_001604 getOrfsOrCds CDS 9140 9271 . - 0 ID=ORF.0.2409 +NC_001604 getOrfsOrCds CDS 8858 8989 . - 0 ID=ORF.0.2410 +NC_001604 getOrfsOrCds CDS 8546 8647 . - 0 ID=ORF.0.2411 +NC_001604 getOrfsOrCds CDS 8546 8635 . - 0 ID=ORF.0.2412 +NC_001604 getOrfsOrCds CDS 8417 8533 . - 0 ID=ORF.0.2413 +NC_001604 getOrfsOrCds CDS 8417 8521 . - 0 ID=ORF.0.2414 +NC_001604 getOrfsOrCds CDS 8255 8383 . - 0 ID=ORF.0.2415 +NC_001604 getOrfsOrCds CDS 8255 8371 . - 0 ID=ORF.0.2416 +NC_001604 getOrfsOrCds CDS 7715 7861 . - 0 ID=ORF.0.2417 +NC_001604 getOrfsOrCds CDS 7715 7822 . - 0 ID=ORF.0.2418 +NC_001604 getOrfsOrCds CDS 7715 7816 . - 0 ID=ORF.0.2419 +NC_001604 getOrfsOrCds CDS 7715 7804 . - 0 ID=ORF.0.2420 +NC_001604 getOrfsOrCds CDS 7565 7669 . - 0 ID=ORF.0.2421 +NC_001604 getOrfsOrCds CDS 7460 7558 . - 0 ID=ORF.0.2422 +NC_001604 getOrfsOrCds CDS 7460 7555 . - 0 ID=ORF.0.2423 +NC_001604 getOrfsOrCds 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