Mercurial > repos > cpt > cpt_gff_extract_seq

changeset 10:3d9f283ff09d draft default tip

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planemo upload commit e14699677f337fd1324aa6898c1388796c5446c1-dirty
author cpt
date Fri, 01 Dec 2023 05:01:01 +0000
parents 9264ac799feb
children
files __pycache__/gff3.cpython-311.pyc gff3_extract_sequence.xml requirements.txt
diffstat 3 files changed, 16 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
Binary file __pycache__/gff3.cpython-311.pyc has changed
--- a/gff3_extract_sequence.xml	Fri Dec 01 04:26:28 2023 +0000
+++ b/gff3_extract_sequence.xml	Fri Dec 01 05:01:01 2023 +0000
@@ -5,18 +5,22 @@
     </macros>
     <expand macro="requirements"/>
     <command detect_errors="aggressive"><![CDATA[
-@GENOME_SELECTOR_PRE@
+        @GENOME_SELECTOR_PRE@
+
+        '$__tool_directory__/gff3_extract_sequence.py'
 
-'$__tool_directory__/gff3_extract_sequence.py'
-@GENOME_SELECTOR@
+        @GENOME_SELECTOR@
+
+        @INPUT_GFF@
 
-@INPUT_GFF@
-
-#if $feature_filter and $feature_filter is not None:
---feature_filter '$feature_filter'
-#end if
-'$nodesc'
-> '$default']]></command>
+        #if $feature_filter and $feature_filter is not None:
+        --feature_filter $feature_filter
+        #end if
+        #if $nodesc
+            --nodesc
+        #end if
+        > '$default']]>
+    </command>
     <inputs>
         <expand macro="genome_selector"/>
         <expand macro="gff3_input"/>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/requirements.txt	Fri Dec 01 05:01:01 2023 +0000
@@ -0,0 +1,2 @@
+biopython==1.81
+cpt_gffparser==1.2.2
\ No newline at end of file