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annotate lib/CPT/Parameter/Option.pm @ 1:f093e08f21f3 draft default tip

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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:47:24 +0000
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1 package CPT::Parameter::Option;
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2 use Moose::Role;
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3 use strict;
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4 use warnings;
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5 use autodie;
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6 with 'CPT::Parameter';
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7
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8 has 'options' => ( is => 'rw', isa => 'HashRef' );
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9 # stored as {short => "some long text"}
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10
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11
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12 sub galaxy_input {
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13 my ( $self, $xml_writer ) = @_;
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14 $self->handle_possible_galaxy_input_repeat_start($xml_writer);
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15 my %params = $self->get_default_input_parameters('select');
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16 $xml_writer->startTag(
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17 'param',
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18 %params,
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19 );
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20 my %options = %{ $self->options() };
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21 foreach ( sort( keys(%options)) ) {
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22 my %p = (value => $_);
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23 if(defined $_ && defined $self->default() && $_ eq $self->default()){
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24 $p{selected} = 'True';
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25 }
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26 $xml_writer->startTag( 'option', %p);
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27 $xml_writer->characters( $options{$_} );
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28 $xml_writer->endTag('option');
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29 }
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30 $xml_writer->endTag('param');
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31 $self->handle_possible_galaxy_input_repeat_end($xml_writer);
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32 }
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33
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34
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35 sub galaxy_output {
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36
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37 }
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38
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39 sub validate_individual {
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40 my ($self, $val) = @_;
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41 my %options = %{ $self->options() };
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42 if($options{$val}){
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43 return 1;
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44 }{
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45 push(@{$self->errors()}, sprintf( "Unknown value [%s] supplied to a option %s", $val,$self->name()));
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46 return 0;
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47 }
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48 }
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49
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50
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51 sub getopt_format {
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52 return '=s';
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53 }
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54
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55 no Moose::Role;
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56 1;
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57
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58 __END__
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59
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60 =pod
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61
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62 =encoding UTF-8
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63
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64 =head1 NAME
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65
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66 CPT::Parameter::Option
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67
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68 =head1 VERSION
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69
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70 version 1.99.4
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71
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72 =head2 galaxy_input
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73
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74 $file_param->galaxy_input($xml_writer); # where $file_param is a CPT::Parameter::*
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75
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76 Utilises the $xml_writer to add a <data> block in the <output> section
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77
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78 =head2 galaxy_output
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79
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80 $file_param->galaxy_output($xml_writer); # where $file_param is a CPT::Parameter::*
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81
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82 Utilises the $xml_writer to add a <data> block in the <output> section
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83
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84 =head2 getopt_format
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85
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86 Returns the format character for a given CPT::Parameter::* type
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87
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88 =head1 AUTHOR
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89
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90 Eric Rasche <rasche.eric@yandex.ru>
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91
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92 =head1 COPYRIGHT AND LICENSE
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93
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94 This software is Copyright (c) 2014 by Eric Rasche.
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95
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96 This is free software, licensed under:
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97
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98 The GNU General Public License, Version 3, June 2007
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99
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100 =cut