Mercurial > repos > cpt > cpt_psm_comparison_table
diff lib/CPT/Parameter/Option.pm @ 1:f093e08f21f3 draft default tip
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
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date | Mon, 05 Jun 2023 02:47:24 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/lib/CPT/Parameter/Option.pm Mon Jun 05 02:47:24 2023 +0000 @@ -0,0 +1,100 @@ +package CPT::Parameter::Option; +use Moose::Role; +use strict; +use warnings; +use autodie; +with 'CPT::Parameter'; + +has 'options' => ( is => 'rw', isa => 'HashRef' ); +# stored as {short => "some long text"} + + +sub galaxy_input { + my ( $self, $xml_writer ) = @_; + $self->handle_possible_galaxy_input_repeat_start($xml_writer); + my %params = $self->get_default_input_parameters('select'); + $xml_writer->startTag( + 'param', + %params, + ); + my %options = %{ $self->options() }; + foreach ( sort( keys(%options)) ) { + my %p = (value => $_); + if(defined $_ && defined $self->default() && $_ eq $self->default()){ + $p{selected} = 'True'; + } + $xml_writer->startTag( 'option', %p); + $xml_writer->characters( $options{$_} ); + $xml_writer->endTag('option'); + } + $xml_writer->endTag('param'); + $self->handle_possible_galaxy_input_repeat_end($xml_writer); +} + + +sub galaxy_output { + +} + +sub validate_individual { + my ($self, $val) = @_; + my %options = %{ $self->options() }; + if($options{$val}){ + return 1; + }{ + push(@{$self->errors()}, sprintf( "Unknown value [%s] supplied to a option %s", $val,$self->name())); + return 0; + } +} + + +sub getopt_format { + return '=s'; +} + +no Moose::Role; +1; + +__END__ + +=pod + +=encoding UTF-8 + +=head1 NAME + +CPT::Parameter::Option + +=head1 VERSION + +version 1.99.4 + +=head2 galaxy_input + + $file_param->galaxy_input($xml_writer); # where $file_param is a CPT::Parameter::* + +Utilises the $xml_writer to add a <data> block in the <output> section + +=head2 galaxy_output + + $file_param->galaxy_output($xml_writer); # where $file_param is a CPT::Parameter::* + +Utilises the $xml_writer to add a <data> block in the <output> section + +=head2 getopt_format + +Returns the format character for a given CPT::Parameter::* type + +=head1 AUTHOR + +Eric Rasche <rasche.eric@yandex.ru> + +=head1 COPYRIGHT AND LICENSE + +This software is Copyright (c) 2014 by Eric Rasche. + +This is free software, licensed under: + + The GNU General Public License, Version 3, June 2007 + +=cut