Mercurial > repos > cpt > cpt_psm_plotter
comparison lib/CPT/Analysis/PAUSE/ParsedSam.pm @ 1:8691c1c61a8e draft default tip
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
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date | Mon, 05 Jun 2023 02:48:47 +0000 |
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1 package CPT::Analysis::PAUSE::ParsedSam; | |
2 | |
3 # ABSTRACT: Library for use in PAUSE analysis | |
4 use strict; | |
5 use warnings; | |
6 use Moose; | |
7 use SVG; | |
8 | |
9 has 'coverage_density' => ( is => 'rw', isa => 'ArrayRef' ); | |
10 has 'read_starts' => ( is => 'rw', isa => 'ArrayRef' ); | |
11 has 'read_ends' => ( is => 'rw', isa => 'ArrayRef' ); | |
12 has 'max' => ( is => 'rw', isa => 'Int' ); | |
13 has 'stats_start_max' => ( is => 'rw', isa => 'Num' ); | |
14 has 'stats_end_max' => ( is => 'rw', isa => 'Num' ); | |
15 has 'stats_start_mean' => ( is => 'rw', isa => 'Num' ); | |
16 has 'stats_end_mean' => ( is => 'rw', isa => 'Num' ); | |
17 has 'stats_start_standard_deviation' => ( is => 'rw', isa => 'Num' ); | |
18 has 'stats_end_standard_deviation' => ( is => 'rw', isa => 'Num' ); | |
19 | |
20 no Moose; | |
21 1; | |
22 | |
23 __END__ | |
24 | |
25 =pod | |
26 | |
27 =encoding UTF-8 | |
28 | |
29 =head1 NAME | |
30 | |
31 CPT::Analysis::PAUSE::ParsedSam - Library for use in PAUSE analysis | |
32 | |
33 =head1 VERSION | |
34 | |
35 version 1.96 | |
36 | |
37 =head1 AUTHOR | |
38 | |
39 Eric Rasche <rasche.eric@yandex.ru> | |
40 | |
41 =head1 COPYRIGHT AND LICENSE | |
42 | |
43 This software is Copyright (c) 2014 by Eric Rasche. | |
44 | |
45 This is free software, licensed under: | |
46 | |
47 The GNU General Public License, Version 3, June 2007 | |
48 | |
49 =cut |