Mercurial > repos > cpt > cpt_psm_plotter
diff lib/CPT/Analysis/PAUSE/ParsedSam.pm @ 1:8691c1c61a8e draft default tip
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
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date | Mon, 05 Jun 2023 02:48:47 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/lib/CPT/Analysis/PAUSE/ParsedSam.pm Mon Jun 05 02:48:47 2023 +0000 @@ -0,0 +1,49 @@ +package CPT::Analysis::PAUSE::ParsedSam; + +# ABSTRACT: Library for use in PAUSE analysis +use strict; +use warnings; +use Moose; +use SVG; + +has 'coverage_density' => ( is => 'rw', isa => 'ArrayRef' ); +has 'read_starts' => ( is => 'rw', isa => 'ArrayRef' ); +has 'read_ends' => ( is => 'rw', isa => 'ArrayRef' ); +has 'max' => ( is => 'rw', isa => 'Int' ); +has 'stats_start_max' => ( is => 'rw', isa => 'Num' ); +has 'stats_end_max' => ( is => 'rw', isa => 'Num' ); +has 'stats_start_mean' => ( is => 'rw', isa => 'Num' ); +has 'stats_end_mean' => ( is => 'rw', isa => 'Num' ); +has 'stats_start_standard_deviation' => ( is => 'rw', isa => 'Num' ); +has 'stats_end_standard_deviation' => ( is => 'rw', isa => 'Num' ); + +no Moose; +1; + +__END__ + +=pod + +=encoding UTF-8 + +=head1 NAME + +CPT::Analysis::PAUSE::ParsedSam - Library for use in PAUSE analysis + +=head1 VERSION + +version 1.96 + +=head1 AUTHOR + +Eric Rasche <rasche.eric@yandex.ru> + +=head1 COPYRIGHT AND LICENSE + +This software is Copyright (c) 2014 by Eric Rasche. + +This is free software, licensed under: + + The GNU General Public License, Version 3, June 2007 + +=cut