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view lib/CPT/Parameter/Flag.pm @ 1:8691c1c61a8e draft default tip
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author | cpt |
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date | Mon, 05 Jun 2023 02:48:47 +0000 |
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package CPT::Parameter::Flag; use Moose; with 'CPT::Parameter'; sub galaxy_command { my ($self) = @_; my $value = $self->get_galaxy_command_identifier(); # If it's hidden, specific to galaxy, and hidden from galaxy users, # then it is safe to assume we've specified a SANE default. if($self->hidden() && $self->_galaxy_specific()){ $value = $self->default(); } my $string; # If it's a repeat, we handle that $string .= $self->handle_possible_galaxy_command_repeat_start(); # If it's required we set it to a value IF we have one. Otherwise value # will be the galaxy_identifier. if($self->required()){ $string .= sprintf( '--%s' . "\n", $self->get_galaxy_cli_identifier() ); }else{ # If # This code is only relevant if we're multiple, otherwise the loop will # not pass here if ( !$self->multiple() ){ $string .= sprintf('#if $%s:' . "\n", $self->get_galaxy_cli_identifier() ); } # Flag $string .= sprintf( '--%s'."\n", $self->get_galaxy_cli_identifier(), ); # End if ( !$self->multiple() ){ $string .= "#end if\n"; } } $string .= $self->handle_possible_galaxy_command_repeat_end(); return $string; } sub galaxy_input { my ( $self, $xml_writer ) = @_; $self->handle_possible_galaxy_input_repeat_start($xml_writer); my %params = $self->get_default_input_parameters('boolean'); $params{falsevalue} = 'False'; $params{truevalue} = 'True'; if($self->default()){ $params{checked} = 'True'; }else{ $params{checked} = ''; } # Remove value since we use "checked" here delete $params{value}; $xml_writer->startTag( 'param', %params, ); $xml_writer->endTag('param'); $self->handle_possible_galaxy_input_repeat_end($xml_writer); } sub galaxy_output { } sub validate_individual { my ($self) = @_; return 1; } sub getopt_format { return ''; } no Moose; 1; __END__ =pod =encoding UTF-8 =head1 NAME CPT::Parameter::Flag =head1 VERSION version 1.99.4 =head2 galaxy_command $file_param->galaxy_command(); # where $file_param is a CPT::Parameter::* Returns the portion of the command used in the <command/> block in galaxy XML files =head2 galaxy_input $file_param->galaxy_input($xml_writer); # where $file_param is a CPT::Parameter::* Utilises the $xml_writer to add a <data> block in the <output> section =head2 galaxy_output $file_param->galaxy_output($xml_writer); # where $file_param is a CPT::Parameter::* Utilises the $xml_writer to add a <data> block in the <output> section =head2 getopt_format Returns the format character for a given CPT::Parameter::* type =head1 AUTHOR Eric Rasche <rasche.eric@yandex.ru> =head1 COPYRIGHT AND LICENSE This software is Copyright (c) 2014 by Eric Rasche. This is free software, licensed under: The GNU General Public License, Version 3, June 2007 =cut