Mercurial > repos > cpt > cpt_psm_plotter
view lib/CPT/ParameterGroup.pm @ 1:8691c1c61a8e draft default tip
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
---|---|
date | Mon, 05 Jun 2023 02:48:47 +0000 |
parents | |
children |
line wrap: on
line source
package CPT::ParameterGroup; use Moose; use strict; use warnings; use autodie; # A special type of a ParameterCollection (could probably be a child...ohwell) use Moose::Util::TypeConstraints; #subtype 'TypeStr', as 'Str', where { $_ eq 'xor' || $_ eq 'or' || $_ eq 'and' }; # Replaced with the enum has 'name' => ( is => 'rw', isa => 'Str'); has 'description' => ( is => 'rw', isa => 'Str'); has 'validator' => ( is => 'rw', isa => enum([qw(xor or and)])); has 'options' => ( is => 'rw', isa => 'ArrayRef[HashRef]' ); sub validate { die 'Unimplemented'; } sub set_data { my ($self, $hash_ref) = @_; my %d = %{$hash_ref}; $self->name($d{name}); $self->description($d{description}); $self->validator($d{validator}); $self->options($d{options}); } sub getopt { my ($self) = @_; die 'unimplemented'; } sub flattenOptionsArray{ my ($self) = @_; my @opts; push(@opts, [sprintf("Option Group: %s\n%s\n[%s]", $self->name(), $self->description(), $self->_formatted_choice_str)]); require CPT::ParameterCollection; my $pC = CPT::ParameterCollection->new(); foreach(@{$self->options()}){ my %z = %{$_}; my $group_name = $z{group}; my @group_opts = @{$z{options}}; push(@opts, [sprintf("Subgroup: %s", $group_name)]); foreach(@group_opts){ my $p = $pC->_coerce_param($_); push(@opts, $p->getOptionsArray()); } } return \@opts; } sub _formatted_choice_str{ my ($self) = @_; if($self->validator() eq 'xor'){ return 'Please only use options from ONE of the groups below, and no more'; }elsif($self->validator() eq 'or'){ return 'Please only use options from at least ONE of the groups below'; }elsif($self->validator() eq 'and'){ return 'Please ensure values/defaults are specified for ALL of the options in the groups below'; } return undef; } sub populate_from_getopt { my ( $self, $opt ) = @_; die 'unimplemented'; } no Moose; 1; __END__ =pod =encoding UTF-8 =head1 NAME CPT::ParameterGroup =head1 VERSION version 1.99.4 =head2 validate $pC->validate(); calls the validate method, which loops through and checks that user values line up with the validate method in each and every slot. Currently unimplemented! =head2 getopt my @getopt_compatible_array = $pC->getopt() Returns a getopt compatible array by looping through the array and simply returning array objects, and calling the getOptionsArray method on CPT::Parameter::* objects =head2 populate_from_getopt $parameterCollection->populate_from_getopt($opt); Populate the ->value() from getopt. This is the special sauce of this portion of the module. Our test case for this function is the connector choice problem. { name => 'Data Source #1', description => "FASTA data source for our script", type => 'xor', # must select only from one subgroup options => [ { group => 'Chado Custom', options => [ [ 'host' => 'Hostname', { required => 1, validate => 'Str' } ], [ 'user' => 'Username', { required => 1, validate => 'Str' } ], [ 'pass' => 'Password', { required => 1, validate => 'Str' } ], [ 'name' => 'Database name', { required => 1, validate => 'Str' } ], [ 'organism' => 'organism name', { required => 1, validate => 'Str' } ], [ 'landmark' => 'landmark name', { required => 1, validate => 'Str' } ], ] }, { group => 'Chado GMOD pre-defined connector', options => [ [ 'conn=s' => 'Connection Nickname', { required => 1, validate => 'Str' } ], ] }, { group => 'File', options => [ [ 'file|f=' => 'Input file', { required => 1, validate => 'File/Input' } ], ] }, ] }, This should intelligently set parameters in $opt based on the passed data. The real question is how to handle password.... =head1 AUTHOR Eric Rasche <rasche.eric@yandex.ru> =head1 COPYRIGHT AND LICENSE This software is Copyright (c) 2014 by Eric Rasche. This is free software, licensed under: The GNU General Public License, Version 3, June 2007 =cut