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annotate lib/CPT/Bio/DataSource/GenBank.pm @ 1:d724f34e671d draft default tip

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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:50:07 +0000
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1 package CPT::Bio::DataSource::GenBank;
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2 no warnings;
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3 use Moose;
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4 with 'CPT::Bio::DataSource';
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6 has 'file' => ( is => 'rw', isa => 'Str' );
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9 sub getSeqIO {
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10 my ($self) = @_;
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11 use Bio::SeqIO;
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12 my $seqio = Bio::SeqIO->new(
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13 -file => $self->file(),
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14 -format => 'GenBank',
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15 );
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16 my @results;
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17 return $seqio;
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18 }
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19
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20 no Moose;
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21 1;
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22
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23 __END__
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24
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25 =pod
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26
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27 =encoding UTF-8
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28
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29 =head1 NAME
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30
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31 CPT::Bio::DataSource::GenBank
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32
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33 =head1 VERSION
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34
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35 version 1.99.4
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36
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37 =head2 getSeqIO
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39 $gbk_ds->getSeqIO();
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40
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41 supposed to return a genabnk DS. Not tested.
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42
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43 =head1 AUTHOR
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44
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45 Eric Rasche <rasche.eric@yandex.ru>
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46
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47 =head1 COPYRIGHT AND LICENSE
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48
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49 This software is Copyright (c) 2014 by Eric Rasche.
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50
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51 This is free software, licensed under:
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52
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53 The GNU General Public License, Version 3, June 2007
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54
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55 =cut