Mercurial > repos > cpt > cpt_psm_prep
diff lib/CPT/Filetype/embl.pm @ 1:d724f34e671d draft default tip
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
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date | Mon, 05 Jun 2023 02:50:07 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/lib/CPT/Filetype/embl.pm Mon Jun 05 02:50:07 2023 +0000 @@ -0,0 +1,54 @@ +package CPT::Filetype::embl; +no warnings; +use Moose; +with 'CPT::Filetype'; + +sub score { + my ($self) = @_; + my $first_line = ${$self->lines()}[0]; + my @embl_identifiers = ( + 'FT', 'FH', 'SQ', 'DE', 'AC', 'PA', 'SV', 'DT', 'KW', + 'OS', 'OC', 'OX', 'R ', '' , 'DR', 'CC', 'CO', 'XX', + ); + my %embl_id_map = map { $_ => 1 } @embl_identifiers; + my $embl_score = 0; + foreach(@{$self->lines()}){ + $embl_score++ if($embl_id_map{substr($_,0,2)}); + } + return $embl_score/10; +} + +sub name { + return 'embl'; +} + +no Moose; +1; + +__END__ + +=pod + +=encoding UTF-8 + +=head1 NAME + +CPT::Filetype::embl + +=head1 VERSION + +version 1.99.4 + +=head1 AUTHOR + +Eric Rasche <rasche.eric@yandex.ru> + +=head1 COPYRIGHT AND LICENSE + +This software is Copyright (c) 2014 by Eric Rasche. + +This is free software, licensed under: + + The GNU General Public License, Version 3, June 2007 + +=cut