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annotate lib/CPT/Filetype/embl.pm @ 1:d724f34e671d draft default tip

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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:50:07 +0000
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1 package CPT::Filetype::embl;
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2 no warnings;
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3 use Moose;
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4 with 'CPT::Filetype';
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5
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6 sub score {
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7 my ($self) = @_;
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8 my $first_line = ${$self->lines()}[0];
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9 my @embl_identifiers = (
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10 'FT', 'FH', 'SQ', 'DE', 'AC', 'PA', 'SV', 'DT', 'KW',
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11 'OS', 'OC', 'OX', 'R ', '' , 'DR', 'CC', 'CO', 'XX',
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12 );
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13 my %embl_id_map = map { $_ => 1 } @embl_identifiers;
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14 my $embl_score = 0;
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15 foreach(@{$self->lines()}){
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16 $embl_score++ if($embl_id_map{substr($_,0,2)});
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17 }
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18 return $embl_score/10;
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19 }
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20
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21 sub name {
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22 return 'embl';
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23 }
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24
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25 no Moose;
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26 1;
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27
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28 __END__
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29
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30 =pod
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31
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32 =encoding UTF-8
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33
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34 =head1 NAME
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35
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36 CPT::Filetype::embl
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37
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38 =head1 VERSION
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39
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40 version 1.99.4
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41
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42 =head1 AUTHOR
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43
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44 Eric Rasche <rasche.eric@yandex.ru>
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45
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46 =head1 COPYRIGHT AND LICENSE
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47
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48 This software is Copyright (c) 2014 by Eric Rasche.
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49
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50 This is free software, licensed under:
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51
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52 The GNU General Public License, Version 3, June 2007
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53
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54 =cut