|
0
|
1 package CPT::Analysis::PAUSE::ParsedSam;
|
|
|
2
|
|
|
3 # ABSTRACT: Library for use in PAUSE analysis
|
|
|
4 use strict;
|
|
|
5 use warnings;
|
|
|
6 use Moose;
|
|
|
7 use SVG;
|
|
|
8
|
|
|
9 has 'coverage_density' => ( is => 'rw', isa => 'ArrayRef' );
|
|
|
10 has 'read_starts' => ( is => 'rw', isa => 'ArrayRef' );
|
|
|
11 has 'read_ends' => ( is => 'rw', isa => 'ArrayRef' );
|
|
|
12 has 'max' => ( is => 'rw', isa => 'Int' );
|
|
|
13 has 'stats_start_max' => ( is => 'rw', isa => 'Num' );
|
|
|
14 has 'stats_end_max' => ( is => 'rw', isa => 'Num' );
|
|
|
15 has 'stats_start_mean' => ( is => 'rw', isa => 'Num' );
|
|
|
16 has 'stats_end_mean' => ( is => 'rw', isa => 'Num' );
|
|
|
17 has 'stats_start_standard_deviation' => ( is => 'rw', isa => 'Num' );
|
|
|
18 has 'stats_end_standard_deviation' => ( is => 'rw', isa => 'Num' );
|
|
|
19
|
|
|
20 no Moose;
|
|
|
21 1;
|
|
|
22
|
|
|
23 __END__
|
|
|
24
|
|
|
25 =pod
|
|
|
26
|
|
|
27 =encoding UTF-8
|
|
|
28
|
|
|
29 =head1 NAME
|
|
|
30
|
|
|
31 CPT::Analysis::PAUSE::ParsedSam - Library for use in PAUSE analysis
|
|
|
32
|
|
|
33 =head1 VERSION
|
|
|
34
|
|
|
35 version 1.96
|
|
|
36
|
|
|
37 =head1 AUTHOR
|
|
|
38
|
|
|
39 Eric Rasche <rasche.eric@yandex.ru>
|
|
|
40
|
|
|
41 =head1 COPYRIGHT AND LICENSE
|
|
|
42
|
|
|
43 This software is Copyright (c) 2014 by Eric Rasche.
|
|
|
44
|
|
|
45 This is free software, licensed under:
|
|
|
46
|
|
|
47 The GNU General Public License, Version 3, June 2007
|
|
|
48
|
|
|
49 =cut
|
